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Platform GPL5844 Query DataSets for GPL5844
Status Public on Dec 13, 2007
Title JCVI PFGRC Francisella tularensis 12K v2 array designed primarily based on strain Schu 4
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Francisella tularensis
Manufacturer JCVI PFGRC
Manufacture protocol 2QFT, with arrayer LUCIDEA, mode Normal, replicates 4, repeats 1, slide_dips 38, machine cycles 868990, pen id 10179, pen cycles -1, operator bj_sp, humidity control On, humidity set point65
Coating Epoxy
 
Description This set includes 2294 oligonucleotides, has 12288 spots distributed in 96 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Sep 12, 2007
Last update date Dec 13, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Samples (6) GSM574374, GSM574375, GSM574376, GSM574377, GSM574379, GSM574380
Series (1)
GSE23454 LVS iclR deletion mutant vs. wild-type LVS

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
ORF locus tag
SPOT_ID
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain LVS Target map of strain LVS
Strain F6168 Target map of strain F6168
Strain Schu 4 Target map of strain Schu 4

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target ORF SPOT_ID Common Name of Primary Target Gene Symbol Strain LVS Strain F6168 Strain Schu 4
2QFT00001_A_1 TTTAGCTACCTTATGGATGGCGATAGCTGCTGATATGGGAGCTACGCTAATTGTTATAATAAACTCGCTG 41.43 31 101 Schu 4 FTT0866c FTT0866c pseudo FTT0866c::70::100.0::2.5E-11::+
2QFT00001_A_10 GCTGAGTTTGTAAACTCTAATGCTAAAAAAGTCTCTGAAGGTGACAAACAAACTTTTATTGAAAATTTCA 30.0 33 90 LVS FTL_0047 FTL_0047 hypothetical protein FTL_0047::70::100.0::1.2E-11::+
2QFT00001_A_11 ACTCAGTAAGGTCAAGGTTAGAAAAATGCTTGGTGCATACTTGCTTTTGTTGTTTAATGGTAAATTAGGC 35.71 32 79 Schu 4 FTT1211c FTT1211c hypothetical protein FTT1211c::70::100.0::5.4E-12::+
2QFT00001_A_12 TCGATAATGGGTATATATCGTAAAGCCCATATTCCAGACGGTATTGGTTACCAAGAGAAATATTATTTCT 34.29 32 108 LVS FTL_0504 FTL_0504 beta-alanine synthase or beta-ureidopropionase FTL_0504::70::100.0::1.2E-11::+ FTT0435::70::98.57143::2.5E-11::+
2QFT00001_A_13 TTTAGCATGGATTATATCAGCTGGTCTAGCAGTTACAGTAGGTTGTTTCGTAGCTACTAGATTAGAAAAA 35.71 30 82 Schu 4 FTT0277c FTT0277c hypothetical protein FTT0277c::70::100.0::2.1E-11::+
2QFT00001_A_14 GATATGATTGCTAATGCTATAAATAAAATATCTGTTTCAAGCTATGACTTTAAGTTATGCTTGAAAATAT 24.29 32 133 Obsolete Obsolete --Obsolete Obsolete
2QFT00001_A_15 AGGCTAAAGCTGGGGTAAATGTAATTACTAGTGCTTTTGGTGGGATTTTAATGGTAATCATAACCTTTTA 34.29 32 90 Obsolete Obsolete --Obsolete Obsolete FTT0225c::70::97.14286::9.1E-11::+
2QFT00001_A_16 AAGTATTTTTCAGCTTTACAATTAACTACAGCCATTAGTTTATGTGTAAGTATTGATCTTTTACTTAATG 25.71 32 112 Schu 4 FTT0551 FTT0551 pseudo FTL_1008::70::100.0::1.2E-11::+ FTT0551::70::100.0::1.4E-11::+
2QFT00001_A_17 ACAGTTTTTGTAGGGGTTGAACCATGTGTCAACCCTTCTTTAGCACCAATACCACAAGGGCTAACACATT 42.86 31 112 Obsolete Obsolete --Obsolete Obsolete
2QFT00001_A_18 GAAGATGTCCCGGAAGATTGGGAATGTCCTGACTGTGGTGTTAGTAAAGATGAATTTGAGCTTCTAGAAG 42.86 30 70 Schu 4 FTT0595c FTT0595c Rubredoxin rubA FTL_0859::70::98.57143::2.4E-11::+ FTT0595c::70::100.0::1.2E-11::+
2QFT00001_A_19 AATCACAAATTCAATTAATGATTTTTATTATCAGTTGGCTAGTTTTACCAAGGTTTTAGAGTATTTATAA 22.86 32 87 Obsolete Obsolete --Obsolete Obsolete
2QFT00001_A_2 AATAGAATCTTTATATCTTTAATATTTATAATCTATAGCTATTTTAAGAGTAGTATAAAAATAACAAAAG 15.71 34 128 Schu 4 FTT1740c FTT1740c pseudo FTT1740c::70::100.0::1.3E-11::+
2QFT00001_A_20 TAGATTATCATTTGCTATTGAAATGCTTTAGTGATGGCGTTAATATTAATACATTGATGTGCTACTCCAG 31.43 30 87 F6168 pFNL10_p5 pFNL10_p5 hypothetical protein pFNL10_p5::70::100.0::1.2E-11::+
2QFT00001_A_21 GCCAAAACTAAAGCAAATCGAGGCAGAAACAAGACCTGTAACTAGAGGTGTTGAAGTTTGTTTGATGTTC 40.0 30 119 Obsolete Obsolete --Obsolete Obsolete FTL_0737::70::100.0::1.8E-11::- FTT1207::70::100.0::1.8E-11::-
2QFT00001_A_22 ATACAGTATAGTGATTCCACAACAAAAAATAGAAAATGATAAAACTAAATTTGTATACTTAATAATATAT 18.57 33 92 Obsolete Obsolete --Obsolete Obsolete
2QFT00001_A_23 ATATTAAGATTTTAGATATATTATCATTCCAAAATAAAATTGATATTTTAATCTATAGATATAATAGCTA 14.29 35 132 Obsolete Obsolete --Obsolete Obsolete
2QFT00001_A_24 TATATTGACTTAAAAGATAAAAAAACTAATAGTTGTCCTTACTGTGGAACGACTTTTAAAGTAGAAAAAG 25.71 32 113 Schu 4 FTT0264c FTT0264c hypothetical protein FTL_0144::70::100.0::1.2E-11::+ FTT0264c::70::100.0::1.2E-11::+
2QFT00001_A_3 TATTAGTAGTTTTGTGATTGCTAGTTACTTTGGTAATACTATTATTGGTTATTTTGGGTTTTTGTTGATT 25.71 35 77 Obsolete Obsolete --Obsolete Obsolete FTT1163c::70::98.57143::1.3E-11::+
2QFT00001_A_4 GTTAATGGTAGTAATTGCAATAATTGCAATCTTAGCAGCTGTAGCAATACCGATTTACTCAAACTACAAA 32.86 30 125 LVS FTL_0392 FTL_0392 Type IV pili fiber building block protein FTL_0392::70::100.0::1.9E-11::+ FTT0889c::70::97.14286::3.1E-11::+
2QFT00001_A_5 TTTATGGTTAATCTTTAGATTATTATTAATATTGGGATACGAATTAGAGCTAGCTAAATACGTTGGTAGA 27.14 33 107 Obsolete Obsolete --Obsolete Obsolete FTT1588c::70::100.0::8.9E-12::-

Total number of rows: 2831

Table truncated, full table size 581 Kbytes.




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