GEO help: Mouse over screen elements for information.
Status
Public on Apr 23, 2007
Title
MPIMG Homo sapiens 44K ArrayCGH4
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
MPIMG_BERLIN
Manufacture protocol
The submegabase resolution whole genome tiling path BAC array consists of the human 32k BAC Re-Array Set* (BACPAC Resources Center, DNA kindly provided by Nigel Carter, Wellcome Trust Sanger Centre) and a set if subtelomeric clones (assembled by members of the COSTB19 Action: Molecular cytogenetics of solid tumours). Protocols for the isolation of DNA (1 Mb Sanger set and subtelomeric set) and the amplification of insert DNA by linker adapter PCR are described in detail at the Molecular Cytogenetics website of MPG. Amplicons were ethanol precipitated, dissolved in 3XSSC/1,5M betaine and spotted on epoxy-coated slides (NUNC, Wiesbaden, FRG) by means of a modified Qarray (originally from Genetix, new Milton, U.K.) and Pointech (Gibbon,MN) Tungston PTL 2500 slit pins. Each BAC is represented by a single spot on the array. * due to recurrent abnormal ratios in a series of control hybridisation encompassing 30 tumors, clones from plate HGP DNA RP C 12_2 were excluded from further analysis.
Support
glass
Coating
other
Submission date
Mar 15, 2007
Last update date
Apr 23, 2007
Contact name
Fikret Erdogan
E-mail(s)
erdogan@molgen.mpg.de Organization name
Max-Planck-Institute
Street address
Ihnestr. 73
City
Berlin
ZIP/Postal code
14195
Country
Germany
Samples (288)
GSM175540 , GSM182163 , GSM182164 , GSM182165 , GSM182166 , GSM182167
GSM182168 ,
GSM182169 ,
GSM182170 ,
GSM182171 ,
GSM182172 ,
GSM182173 ,
GSM182174 ,
GSM182175 ,
GSM182176 ,
GSM182177 ,
GSM182178 ,
GSM182179 ,
GSM182180 ,
GSM182181 ,
GSM182182 ,
GSM182183 ,
GSM182184 ,
GSM182185 ,
GSM182186 ,
GSM182187 ,
GSM182188 ,
GSM182189 ,
GSM182190 ,
GSM182191 ,
GSM182192 ,
GSM182193 ,
GSM182194 ,
GSM182195 ,
GSM182196 ,
GSM182197 ,
GSM182198 ,
GSM182199 ,
GSM182200 ,
GSM182201 ,
GSM182202 ,
GSM182203 ,
GSM182204 ,
GSM182205 ,
GSM182206 ,
GSM182207 ,
GSM182208 ,
GSM182209 ,
GSM182210 ,
GSM182211 ,
GSM182212 ,
GSM182213 ,
GSM182214 ,
GSM182215 ,
GSM182216 ,
GSM182217 ,
GSM182218 ,
GSM182219 ,
GSM182220 ,
GSM182221 ,
GSM182222 ,
GSM182223 ,
GSM183548 ,
GSM183549 ,
GSM183550 ,
GSM183551 ,
GSM183552 ,
GSM183553 ,
GSM183554 ,
GSM183555 ,
GSM183641 ,
GSM183642 ,
GSM183643 ,
GSM188129 ,
GSM188130 ,
GSM188131 ,
GSM188132 ,
GSM188133 ,
GSM188134 ,
GSM188135 ,
GSM188136 ,
GSM188137 ,
GSM188138 ,
GSM188139 ,
GSM188140 ,
GSM188142 ,
GSM188143 ,
GSM188144 ,
GSM188145 ,
GSM188146 ,
GSM188147 ,
GSM188148 ,
GSM188149 ,
GSM188150 ,
GSM188151 ,
GSM188152 ,
GSM188153 ,
GSM188154 ,
GSM188155 ,
GSM188156 ,
GSM188157 ,
GSM188158 ,
GSM188159 ,
GSM188160 ,
GSM188161 ,
GSM188162 ,
GSM188163 ,
GSM188164 ,
GSM188165 ,
GSM188166 ,
GSM190804 ,
GSM190805 ,
GSM190806 ,
GSM190807 ,
GSM190808 ,
GSM191060 ,
GSM191061 ,
GSM191062 ,
GSM191063 ,
GSM191064 ,
GSM191065 ,
GSM191066 ,
GSM191067 ,
GSM191068 ,
GSM191069 ,
GSM194915 ,
GSM194916 ,
GSM194917 ,
GSM194918 ,
GSM194919 ,
GSM194920 ,
GSM194921 ,
GSM194922 ,
GSM194923 ,
GSM194924 ,
GSM194925 ,
GSM194926 ,
GSM194927 ,
GSM194928 ,
GSM194929 ,
GSM194930 ,
GSM194931 ,
GSM194932 ,
GSM194933 ,
GSM194934 ,
GSM194935 ,
GSM194936 ,
GSM195048 ,
GSM195049 ,
GSM195050 ,
GSM195051 ,
GSM195052 ,
GSM195053 ,
GSM195054 ,
GSM195055 ,
GSM195056 ,
GSM195057 ,
GSM195058 ,
GSM195059 ,
GSM195060 ,
GSM195061 ,
GSM195062 ,
GSM195063 ,
GSM195164 ,
GSM195165 ,
GSM195166 ,
GSM195167 ,
GSM195168 ,
GSM195169 ,
GSM195170 ,
GSM195171 ,
GSM195172 ,
GSM195173 ,
GSM195174 ,
GSM195175 ,
GSM195176 ,
GSM195177 ,
GSM195178 ,
GSM195179 ,
GSM195180 ,
GSM195181 ,
GSM195182 ,
GSM195183 ,
GSM200580 ,
GSM201089 ,
GSM201090 ,
GSM201091 ,
GSM201092 ,
GSM201093 ,
GSM201094 ,
GSM213021 ,
GSM213022 ,
GSM213023 ,
GSM213024 ,
GSM213025 ,
GSM213026 ,
GSM213027 ,
GSM213028 ,
GSM213029 ,
GSM213030 ,
GSM213031 ,
GSM213032 ,
GSM213033 ,
GSM213166 ,
GSM213167 ,
GSM213168 ,
GSM213169 ,
GSM213170 ,
GSM213171 ,
GSM213172 ,
GSM213173 ,
GSM213176 ,
GSM213177 ,
GSM213178 ,
GSM213179 ,
GSM213180 ,
GSM213181 ,
GSM213182 ,
GSM213183 ,
GSM213184 ,
GSM213185 ,
GSM213186 ,
GSM213188 ,
GSM213189 ,
GSM213190 ,
GSM213191 ,
GSM213192 ,
GSM213250 ,
GSM213251 ,
GSM213252 ,
GSM213253 ,
GSM213254 ,
GSM213255 ,
GSM213256 ,
GSM213257 ,
GSM213259 ,
GSM214139 ,
GSM214140 ,
GSM214141 ,
GSM214142 ,
GSM214143 ,
GSM214144 ,
GSM214145 ,
GSM214146 ,
GSM214147 ,
GSM214148 ,
GSM214149 ,
GSM214150 ,
GSM214151 ,
GSM214152 ,
GSM214153 ,
GSM214154 ,
GSM214155 ,
GSM214156 ,
GSM214166 ,
GSM214167 ,
GSM214168 ,
GSM214169 ,
GSM214172 ,
GSM214173 ,
GSM214174 ,
GSM214175 ,
GSM214177 ,
GSM214178 ,
GSM214179 ,
GSM214747 ,
GSM241386 ,
GSM241387 ,
GSM241388 ,
GSM241389 ,
GSM241390 ,
GSM244125 ,
GSM244126 ,
GSM244129 ,
GSM244130 ,
GSM251229 ,
GSM251230 ,
GSM251231 ,
GSM251232 ,
GSM251233 ,
GSM251234 ,
GSM251235 ,
GSM251236 ,
GSM251237 ,
GSM251238 ,
GSM251239 ,
GSM251240 ,
GSM255760 Series (7)
GSE6225 16p13 aberrations predispose to autism and MR
GSE7527 Array CGH in congenital heart disease
GSE7950 Identification of Candidate Genes for Sporadic Amyotrophic Lateral Sclerosis by Array Comparative Genomic Hybridisation
GSE8090 Fine mapping of a de novo interstitial 10q22-q23 duplication in a patient with congenital heart disease and microcephaly
GSE8606 Comparative genomic hybridization suggests a role for NRXN1 and APBA2 in schizophrenia
GSE9928 Analysis of AML/MDS patients with 11q/MLL amplification
GSE10115 Mapping translocation breakpoints by next-generation sequencing
Data table header descriptions ID Internal_Name clone name for internal use
Name original library name
Block block
Row row
Col column
Chromosom chromosome
Chromosom_start clone startposition (UCSC Maz 2004(Hg17),NCBI Build 35)
Chromosom_end clone end position (UCSC Maz 2004(Hg17),NCBI Build 35)
GB_RANGE NCBI Build 35 chr accession [start..end]
CLONE_ID BAC Clone
SPOT_ID spot identifier
Data table ID Internal_Name Name Block Row Col Chromosom Chromosom_start Chromosom_end GB_RANGE CLONE_ID SPOT_ID 1_1_1_bK2185H17
bK2185H17
CTD-2185H17
1
1
1
chr5
142505076
142742911
NC_000005.8[142505076..142742911]
CTD-2185H17 1_2_1_bK1444N24
bK1444N24
bK1444N24
1
2
1
--
--
--
bK1444N24
1_3_1_bK1184C17
bK1184C17
bK1184C17
1
3
1
--
--
--
bK1184C17
1_4_1_bK2547N9
bK2547N9
CTD-2547N9
1
4
1
chr19
8490674
8519982
NC_000019.8[8490674..8519982]
CTD-2547N9 1_5_1_bK2022G9
bK2022G9
CTD-2022G9
1
5
1
chr5
53343253
53470278
NC_000005.8[53343253..53470278]
CTD-2022G9 1_6_1_bK1370H24
bK1370H24
bK1370H24
1
6
1
--
--
--
bK1370H24
1_7_1_bK1107A22
bK1107A22
bK1107A22
1
7
1
--
--
--
bK1107A22
1_8_1_bA388F14
bA388F14
RP11-388F14
1
8
1
chr17
13228765
13375795
NC_000017.9[13228765..13375795]
RP11-388F14 1_9_1_bA318G8
bA318G8
RP11-318G8
1
9
1
chr12
25394082
25557296
NC_000012.9[25394082..25557296]
RP11-318G8 1_10_1_bA256K9
bA256K9
RP11-256K9
1
10
1
chrY
21069127
21178300
NC_000024.7[21069127..21178300]
RP11-256K9 1_11_1_bA183M3
bA183M3
RP11-183M3
1
11
1
chr17
14255683
14412328
NC_000017.9[14255683..14412328]
RP11-183M3 1_12_1_bA356D23
bA356D23
RP11-356D23
1
12
1
chr5
81265605
81410506
NC_000005.8[81265605..81410506]
RP11-356D23 1_13_1_bA302L17
bA302L17
RP11-302L17
1
13
1
chr5
89564648
89728720
NC_000005.8[89564648..89728720]
RP11-302L17 1_14_1_bA243P9
bA243P9
RP11-243P9
1
14
1
chrY
19025584
19062950
NC_000024.7[19025584..19062950]
RP11-243P9 1_15_1_bA170P5
bA170P5
RP11-170P5
1
15
1
chr5
165677723
165841061
NC_000005.8[165677723..165841061]
RP11-170P5 1_16_1_empty
empty
empty
1
16
1
--
--
--
--Empty
1_17_1_empty
empty
empty
1
17
1
--
--
--
--Empty
1_18_1_bA569P10
bA569P10
RP11-569P10
1
18
1
chr3
174372411
174549477
NC_000003.9[174372411..174549477]
RP11-569P10 1_19_1_bA560C7
bA560C7
RP11-560C7
1
19
1
chr2
23056714
23241165
NC_000002.9[23056714..23241165]
RP11-560C7 1_20_1_empty
empty
empty
1
20
1
--
--
--
--Empty
44640 4454 Kbytes .Supplementary data files not provided
Less...
More...