NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL4245 Query DataSets for GPL4245
Status Public on Apr 20, 2007
Title McMahon_Mouse_44K_Neural
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent
Manufacture protocol Spotted 60-mers printed with Ink-jet printers
 
 
Contributor(s) Vokes SA, Ji H, Wong WH, McMahon AP, McCuine S, Giles S
Submission date Aug 31, 2006
Last update date Apr 20, 2007
Contact name Steve A. Vokes
E-mail(s) svokes@austin.utexas.edu
Organization name University of Texas at Austin
Department Molecular Biosciences
Lab Steve Vokes
Street address 2500 Speedway
City Austin
State/province Texas
ZIP/Postal code 78757
Country USA
 
Samples (12) GSM132938, GSM132957, GSM132971, GSM132981, GSM132989, GSM132999 
Series (1)
GSE5683 Identification of Gli-Act targets in the mouse ventral neural tube by ChIP

Data table header descriptions
ID
Column Indicates column coordinate of probe
Row Indicates row coordinate of probe
Name Indicates the genomic coordinates (mm build 34) of the probe
RefNumber Unique identifier number for each probe
GeneName redundant with name
Description The genomic locus associated with the probe
GB_ACC The reference sequence (RefSeq) for the genomic locus
FeatureNum Unique number for each feature on array
SEQUENCE sequence of oligonucleotide probe
ProbeUID unique probe ID (so duplicate probes would share this ID)
ControlType 0= experimental, 1 or -1 = control probes
SPOT_ID identifier for spots not identified with a RefSeq accession

Data table
ID Column Row Name RefNumber GeneName Description GB_ACC FeatureNum SEQUENCE ProbeUID ControlType SPOT_ID
107_075533073_075533133 4 1 Chr7:075533073-075533133 43000 Chr7:075533073-075533133 Homer2 NM_011983 43000 TGCCCTGCATTGTAGAGATCAGATGCTAGAGCTACTATAAATGCGTATTTCAAGGAAATA 42167 0
120_052747518_052747572 5 1 ChrX:052747518-052747572 42570 ChrX:052747518-052747572 Zic3 NM_009575 42570 GTGCCTTTCTATTCTAGCCCCACTGTGCAAACAAAGGTTCCTTCTATTTGTTTTATAACC 41744 0
113_068679089_068679149 6 1 Chr13:068679089-068679149 42140 Chr13:068679089-068679149 Irx2 NM_010574 42140 TATTTCCACTTCTGTTTGTGTGAGGACCATAGTAACATGGTTTGTTTTTAACTCCACTAC 41323 0
101_073156861_073156921 7 1 Chr1:073156861-073156921 41710 Chr1:073156861-073156921 Igfbp2 NM_008342 41710 CTATATTAAGTCAAATGGAGGTGCTCTCTCATAAGGATTCACAAGCTCTCCCATAGATTT 40906 0
106_052415100_052415149 8 1 Chr6:052415100-052415149 41280 Chr6:052415100-052415149 Hoxa13 NM_008264 41280 ATTAAACTTTAATCGGCTGCAGTCAAGGTCGTCCAGGTGGTAAAAGCGTATAACCGACGC 40487 0
106_036953290_036953350 9 1 Chr6:036953290-036953350 40850 Chr6:036953290-036953350 Ptn NM_008973 40850 GCTCACCAAATTATTCTTCGAGATAAAATATCAGGATAGTCATTAATTCCTTAAAGTGGG 40069 0
103_158857865_158857925 10 1 Chr3:158857865-158857925 40420 Chr3:158857865-158857925 5031439A09Rik NM_026582 40420 ACACTACGTTAGTTCTAACTTTTCTTAGAAAAGAAACATAACATTTCTTGGAGGAAGTTT 39646 0
113_058804411_058804456 11 1 Chr13:058804411-058804456 39990 Chr13:058804411-058804456 Gas1 NM_008086 39990 CCTTCTTTGCCACACTGAAAAAGGAGGCCCCGTGAAAGCAGCATCATAACCGACGCCTAA 39224 0
102_105399545_105399605 12 1 Chr2:105399545-105399605 39560 Chr2:105399545-105399605 Pax6 NM_013627 39560 TTCTCAGGTTGTGTTTAAGTTATATTCACTGACATTTCTAACCTCTTCAATCTGATCTCA 38800 0
102_051089923_051089983 14 1 Chr2:051089923-051089983 38700 Chr2:051089923-051089983 Rhoe NM_028810 38700 GCACACACAAAATTTTCTGCATAAATATCTCACATCACATATTGATTTTATTGAGATCCA 37962 0
110_102929937_102929997 15 1 Chr10:102929937-102929997 38270 Chr10:102929937-102929997 Cart1 NM_172553 38270 TTAACTGGTTTTTTTTATTTTTAAGGTATAAAAGAGATAAGATAAAATAATTAAATCTCA 37541 0
112_053328610_053328670 16 1 Chr12:053328610-053328670 37840 Chr12:053328610-053328670 Nkx2-9 NM_008701 37840 CATAGGGATATCAAAATGGGATAGTTTTTAACAACTGGATGCTCACTAGGGTAACTTCTG 37121 0
112_053350880_053350940 17 1 Chr12:053350880-053350940 37410 Chr12:053350880-053350940 Nkx2-9 NM_008701 37410 GGGTAAGTATGTATTTAGACAATTTAAAGTGTGTCTCATTTACCCAATTATAAACAGCTG 36699 0
110_067612453_067612513 18 1 Chr10:067612453-067612513 36980 Chr10:067612453-067612513 Gm237 NM_001005419 36980 AATAAGAGAGCAGGATGCGATCTAATTCTCTAAGCATTCTGGTTTGTGAAATGCAAAGTT 36276 0
102_146697124_146697184 19 1 Chr2:146697124-146697184 36550 Chr2:146697124-146697184 Nkx2-2 NM_010919 36550 TTCATTCTTTGATGGTGTGTAATATGATGATATTGATGAGAGAGATGAAAGTCAGGGGAG 35856 0
103_005205066_005205126 20 1 Chr3:005205066-005205126 36120 Chr3:005205066-005205126 Zfhx4 NM_030708 36120 GTATATTGTTATTAAGAGATTTTGATATGTCATGAAATGAATATAAGTCATACTATTCCA 35435 0
107_095520937_095520987 21 1 Chr7:095520937-095520987 35690 Chr7:095520937-095520987 Centd2 NM_198096 35690 GTCTTAGCTCTACTGGCTACCTAGGAGACACGACTACATCCCTGTCTAATATAACCGACG 35011 0
102_074357334_074357386 22 1 Chr2:074357334-074357386 35260 Chr2:074357334-074357386 Evx2 NM_007967 35260 GTCAAAATGACCCATACATCCTTCCGAGTCGGAGATGTCATTCATCAAAAAGATAACCGA 34586 0
116_051361400_051361460 23 1 Chr16:051361400-051361460 34830 Chr16:051361400-051361460 Alcam NM_009655 34830 AAATTGTTGAAGCTAGGTGTTCTAGGAGTTATGTACCAAATTGTACATAAAGAACAATGA 34167 0
113_058863474_058863533 24 1 Chr13:058863474-058863533 34400 Chr13:058863474-058863533 A030007L22 NM_177810 34400 GTTTGCAAAGGTTAACTTAACTGTGACTCGTTGTATCCAGATTTCTACAACAGCAAGCAA 33741 0

Total number of rows: 42850

Table truncated, full table size 7502 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap