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Platform GPL4146 Query DataSets for GPL4146
Status Public on Aug 17, 2006
Title Agilent-014794 C. elegans Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 2 (G4495A)
Technology type in situ oligonucleotide
Distribution commercial
Organism Caenorhabditis elegans
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4495A
 
Description
C. elegans Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 2

Arrays of this design have barcodes that begin with 16014794 or 2514794.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 17, 2006
Last update date Aug 17, 2006
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 267 912 CeCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_83_P00451174 FALSE chrIV:014186330-014186389
5 267 904 A_83_P01668730 FALSE chrV:016323653-016323711
6 267 902 A_83_P00533647 FALSE chrV:007380860-007380919
7 267 900 A_83_P00506738 FALSE chrV:003989585-003989644
8 267 898 A_83_P00677517 FALSE chrX:004454408-004454467
9 267 896 A_83_P00750602 FALSE chrX:012992182-012992241
10 267 894 A_83_P01469711 FALSE chrIV:016386599-016386658
11 267 892 A_83_P00780534 FALSE chrX:016638932-016638991
12 267 890 A_83_P00684436 FALSE chrX:005269914-005269973
13 267 888 A_83_P00714282 FALSE chrX:008760545-008760604
14 267 886 A_83_P01853313 FALSE chrX:011443779-011443838
15 267 884 A_83_P00475751 FALSE chrIV:017273209-017273268
16 267 882 A_83_P00690818 FALSE chrX:006013065-006013124
17 267 880 A_83_P00659352 FALSE chrX:002223378-002223437
18 267 878 A_83_P00443760 FALSE chrIV:013213239-013213292
19 267 876 A_83_P00508621 FALSE chrV:004242540-004242599
20 267 874 A_83_P01879695 FALSE chrX:013579595-013579650

Total number of rows: 243504

Table truncated, full table size 15606 Kbytes.




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