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Status
Public on Aug 17, 2006
Title
Agilent-014717 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2 (G4490A) (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4490A
Description
Submission date
Aug 17, 2006
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (88)
GSM189180 , GSM189183 , GSM189333 , GSM189335 , GSM189337 , GSM189339
GSM189341 ,
GSM189429 ,
GSM189481 ,
GSM189483 ,
GSM241974 ,
GSM241975 ,
GSM319611 ,
GSM319629 ,
GSM319631 ,
GSM320260 ,
GSM320262 ,
GSM320264 ,
GSM333379 ,
GSM333461 ,
GSM333629 ,
GSM333652 ,
GSM333790 ,
GSM333792 ,
GSM339385 ,
GSM339387 ,
GSM339390 ,
GSM339392 ,
GSM412773 ,
GSM412774 ,
GSM417704 ,
GSM417756 ,
GSM456226 ,
GSM456227 ,
GSM456228 ,
GSM456229 ,
GSM456230 ,
GSM456231 ,
GSM456232 ,
GSM456233 ,
GSM463000 ,
GSM463002 ,
GSM501684 ,
GSM501685 ,
GSM552532 ,
GSM558405 ,
GSM558407 ,
GSM558409 ,
GSM558411 ,
GSM558413 ,
GSM558415 ,
GSM558417 ,
GSM558419 ,
GSM558421 ,
GSM558423 ,
GSM558425 ,
GSM558427 ,
GSM558429 ,
GSM558431 ,
GSM558433 ,
GSM558435 ,
GSM558437 ,
GSM558439 ,
GSM558441 ,
GSM558443 ,
GSM558445 ,
GSM558447 ,
GSM558449 ,
GSM558451 ,
GSM568652 ,
GSM568653 ,
GSM568654 ,
GSM568655 ,
GSM568656 ,
GSM593670 ,
GSM606630 ,
GSM655942 ,
GSM722528 ,
GSM722530 ,
GSM722532 ,
GSM742106 ,
GSM742107 ,
GSM742108 ,
GSM742109 ,
GSM742110 ,
GSM742111 ,
GSM1716751 ,
GSM1716752 Series (23)
GSE7815 Histone H3K4 and H3K27 trimethylation analysis in ES cells, Mefs and induced pluriptent cells.
GSE9572 Microarray-based global mapping of integration sites of retrotransposon, intracisternal A-particle, in mouse genome
GSE12482 Sall4 regulates distinct transcription circuitries in different blastocyst-derived stem cell lineages
GSE13247 A role for mammalian Sin3 in permanent gene silencing
GSE13467 Comparison Ezh1 and Ezh2 binding by ChIP on chip in F9 mouse cells
GSE16427 p53 binding in mouse embryonic stem cells untreated or treated with adriamycin
GSE16646 Targets of the transcription factor Brachyury in differentiating mouse ES cells
GSE18258 Global analysis of H3K4 methylation
GSE18262 ChIP-chip with antibodies for histone 3 lysine 4 trimethylation and histone 3 in Mll1+/+ and Mll1-/- MEFs
GSE18629 SMAD1/5, SMAD2 and SMAD4 binding/occupancy profiling in murine embryonic stem cells R1
GSE20068 p27 binds to promoters of multiple genes leading to their repression
GSE20069 p27Kip1 regulates transcription of genes involved in tumorigenesis
GSE22195 Zic3 ChIP-on-chip in mouse ES cells
GSE22474 Genome-wide location analysis of Dnmt3a-mediated epigenetic regulation in murine postnatal subventricular zone (SVZ) neural stem cells (NSCs) [Agilent]
GSE22476 Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes
GSE23043 Chip-on-chip analysis of direct Nkx2.1 target genes in proliferating and differentiating epithelium in mouse lung development.
GSE24623 Adult_mouse_testis_CREM_ChIP_chip
GSE26653 HoxB4 in hematopoietic stem cells
GSE29208 TEAD4 occupied genes in differentiated C2C12 myoblasts
GSE29985 Identification by ChIP-on-Chip of ARX target genes, a transcription factor implicated in mental retardation and epilepsy
GSE30191 ARX transcription factor implicated in mental retardation and epilepsy
GSE70074 RING1 links retinoic acid signaling to the early proximal-distal specification of forelimb bud via Meis2 repression (ChIP-chip)
GSE70077 RING1 proteins contribute to early proximal-distal specification of the forelimb bud by restricting Meis2 expression
Relations Alternative to
GPL14597 (Probe Name version)Alternative to
GPL7777 Alternative to
GPL7793
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]
Data table ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE 1
267
912
MmCGHBrightCorner
pos
2
267
910
DarkCorner
pos
3
267
908
DarkCorner
pos
4
267
906
A_68_P30405827
FALSE
NM_145476 Tbc1d22a
ref|NM_145476|ref|Tbc1d22a:602|mgc|BC066009:602
chr15:086297403-086297448
INSIDE
NC_000081.3[086297403..086297448]
5
267
904
A_68_P27927230
FALSE
NM_008850 Pitpna
ref|NM_008850|ref|Pitpna:39347|mgc|BC056171:39302
chr11:075709001-075709056
INSIDE
NC_000077.3[075709001..075709056]
6
267
902
A_68_P30013681
FALSE
NM_008537 Amacr
ref|NM_008537|ref|Amacr:14414|mgc|BC015825:14331
chr15:011054431-011054485
INSIDE
NC_000081.3[011054431..011054485]
7
267
900
A_68_P30742419
FALSE
NM_198297 Trat1
ref|NM_198297|ref|Trat1:783|mgc|BC104350:604
chr16:048532046-048532105
INSIDE
NC_000082.3[048532046..048532105]
8
267
898
A_68_P29059429
FALSE
NM_012015 H2afy
ref|NM_012015|ref|H2afy:29|ens|ENSMUST00000045788:-7019|mgc|BC006955:8
chr13:055224486-055224530
INSIDE
NC_000079.3[055224486..055224530]
9
267
896
A_68_P31953160
FALSE
NM_023044 Slc15a3
ref|NM_023044|ref|Slc15a3:-279|mgc|BC051940:-608
chr19:010522367-010522411
PROMOTER
NC_000085.3[010522367..010522411]
10
267
894
A_68_P30533482
FALSE
NM_025708 4432406C05Rik
ref|NM_025708|ref|4432406C05Rik:4030|ref|NM_016881:-4035|ens|ENSMUST00000064197:-8352|mgc|BC027261:3860
chr16:008307291-008307350
DOWNSTREAM
NC_000082.3[008307291..008307350]
11
267
892
A_68_P28049269
FALSE
NM_008379 Kpnb1
ref|NM_008379|ref|Kpnb1:-3836|mgc|BC052438:-4081
chr11:097300741-097300793
PROMOTER
NC_000077.3[097300741..097300793]
12
267
890
A_68_P27796686
FALSE
NM_029976 D11Ertd497e
ref|NM_029976|ref|D11Ertd497e:-2039|ens|ENSMUST00000020659:-2039|ens|ENSMUST00000082536:530
chr11:051922351-051922410
PROMOTER
NC_000077.3[051922351..051922410]
13
267
888
A_68_P28265618
FALSE
NM_172950 Lpin1
ref|NM_172950|ref|Lpin1:-1331|ens|ENSMUST00000048538:-1352|ens|ENSMUST00000067124:19865
chr12:016645664-016645709
PROMOTER
NC_000078.3[016645664..016645709]
14
267
886
A_68_P32030727
FALSE
NM_177360 Dmrt3
ref|NM_177360|ref|Dmrt3:1017|mgc|BC052041:1011
chr19:025311513-025311572
INSIDE
NC_000085.3[025311513..025311572]
15
267
884
A_68_P27917509
FALSE
NM_147023 Olfr385
ref|NM_147023|ref|Olfr385:945|ens|ENSMUST00000071553:945
chr11:073670336-073670395
DOWNSTREAM
NC_000077.3[073670336..073670395]
16
267
882
A_68_P31185610
FALSE
mgc|BC089564:-5108
chr17:040744085-040744144
Unknown
NC_000083.3[040744085..040744144]
17
267
880
A_68_P30686504
FALSE
NM_172380 9630046K23Rik
ref|NM_172380|ref|9630046K23Rik:27112|ens|ENSMUST00000089577:67710|mgc|BC026809:27135
chr16:038234176-038234229
INSIDE
NC_000082.3[038234176..038234229]
18
267
878
A_68_P30954069
FALSE
NM_009384 Tiam1
ref|NM_009384|ref|Tiam1:-649|ens|ENSMUST00000002588:-649|ens|ENSMUST00000089086:13223
chr16:090011374-090011433
PROMOTER
NC_000082.3[090011374..090011433]
19
267
876
A_68_P27953568
FALSE
NM_139228 Rhbdl3
ref|NM_139228|ref|Rhbdl3:-1166|mgc|BC054784:-1166
chr11:080381455-080381514
PROMOTER
NC_000077.3[080381455..080381514]
20
267
874
A_68_P29937464
FALSE
NM_145464 Sox21
ref|NM_145464|ref|Sox21:1587|ref|NM_177753:1641
chr14:112636878-112636928
INSIDE
NC_000080.3[112636878..112636928]
243504 43977 Kbytes .Supplementary data files not provided
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