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Platform GPL3997 Query DataSets for GPL3997
Status Public on Jul 15, 2006
Title Escherichia Coli Lambda Lysogen
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Escherichia coli
Manufacturer Arkin Lab, University of California at Berkeley
Manufacture protocol cDNA probes were spotted onto SuperAmine glass slides using a Genomic Solutions OmniGrid robotic printer. After printing, the cDNA probes were fixed onto the slides by UV cross-linking.
 
 
Submission date Jul 13, 2006
Last update date Jul 15, 2006
Contact name Adam P. Arkin
E-mail(s) mjoachimiak@lbl.gov
Phone (510) 495-2366
Fax (510) 486-6219
URL http://vimss.lbl.gov
Organization name Virtual Institute for Microbial Stress and Survival
Department Physical Biosciences Division
Lab Lawrence Berkeley National Laboratory
Street address 1 Cyclotron Road
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
 

Data table header descriptions
ID Unique Identifier
BLOCK Block
COLUMN Column
ROW Row
ORF Blattner ID
GenBank The GenBank accession number of a representative sequence.
VIMSS VIMSS ID (see http://www.microbesonline.org)
Barcode.Source Probe ID
PCR.Flag Flag 0 if PCR product present, 1 if not present
Gene.Symbol A gene symbol, when one is available (from UniGene).
Gene.Title Title of Gene represented by the probe.
Alignments Position of the alignment of the target sequence on the genome. Format: "chromosome // start-end // strand // percentage identity"
SPOT_ID

Data table
ID BLOCK COLUMN ROW ORF GenBank VIMSS Barcode.Source PCR.Flag Gene.Symbol Gene.Title Alignments SPOT_ID
1664 2 2 7 b0001 0 14146 SigmaGenosys_000001851 1 thrL Thr operon leader peptide NC_004431.1:190-250 (+) // 100.0 // /// NC_002655.2:190-268 (+) // 100.0 // /// NC_002695.1:190-268 (+) // 100.0 // /// NC_000913.2:190-250 (+) // 100.0 //
1712 4 2 7 b0002 0 14147 SigmaGenosys_000001852 0 thrA Aspartokinase I /// bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal) NC_004431.1:3148-3510 (+) // 98.62 // /// NC_002655.2:2454-2816 (+) // 98.34 // /// NC_002695.1:2454-2816 (+) // 98.34 // /// NC_000913.2:2437-2799 (+) // 100.0 //
1760 2 8 7 b0003 1801 14148 SigmaGenosys_000001853 0 thrB Homoserine kinase NC_004431.1:4053-4444 (+) // 98.47 // /// NC_002655.2:3359-3750 (+) // 98.21 // /// NC_002695.1:3359-3750 (+) // 98.21 // /// NC_000913.2:3342-3733 (+) // 100.0 //
1808 4 8 7 b0004 2734 14149 SigmaGenosys_000001854 0 thrC Threonine synthase NC_004431.1:5331-5721 (+) // 97.18 // /// NC_002655.2:4637-5027 (+) // 98.72 // /// NC_002695.1:4637-5027 (+) // 98.72 // /// NC_000913.2:4620-5010 (+) // 100.0 //
2680 4 13 10 b0005 4234 14150 SigmaGenosys_000002656 0 yaaX hypothetical protein NC_002655.2:5263-5547 (+) // 97.18 // /// NC_002695.1:5263-5547 (+) // 97.18 // /// NC_000913.2:5246-5530 (+) // 100.0 //
2346 10 13 9 b0006 4683 14151 SigmaGenosys_000002657 0 yaaA Protein yaaA /// hypothetical protein NC_004431.1:6310-6696 (-) // 95.95 // /// NC_002655.2:5700-6095 (-) // 99.49 // /// NC_002695.1:5700-6095 (-) // 99.49 // /// NC_000913.2:5683-6078 (-) // 100.0 //
757 16 12 3 b0007 5529 14152 SigmaGenosys_000000632 0 yaaJ inner membrane transport protein NC_004431.1:7153-7521 (-) // 97.28 // /// NC_002655.2:6552-6920 (-) // 98.37 // /// NC_002695.1:6552-6920 (-) // 98.37 // /// NC_000913.2:6535-6903 (-) // 100.0 //
1490 11 6 6 b0008 7238 14153 SigmaGenosys_000001256 0 talB Transaldolase B NC_004431.1:9340-9784 (+) // 99.1 // /// NC_002655.2:8739-9183 (+) // 99.77 // /// NC_002695.1:8739-9183 (+) // 99.77 // /// NC_000913.2:8722-9166 (+) // 100.0 //
2106 12 12 8 b0009 8306 14154 SigmaGenosys_000002276 0 mog Molybdopterin biosynthesis mog protein /// putative molybdochetalase in molybdopterine biosynthesis NC_004431.1:10135-10511 (+) // 98.67 // /// NC_002655.2:9534-9910 (+) // 99.2 // /// NC_002695.1:9534-9910 (+) // 99.2 // /// NC_000913.2:9517-9893 (+) // 100.0 //
2394 12 13 9 b0010 8928 14155 SigmaGenosys_000002658 0 yaaH putative regulator, integral membrane protein NC_004431.1:10739-11188 (-) // 97.94 // /// NC_002655.2:9968-10357 (-) // 99.74 // /// NC_002695.1:9968-10357 (-) // 99.74 // /// NC_000913.2:9951-10340 (-) // 100.0 //
2419 5 2 10 b0011 9643 14156 SigmaGenosys_000002379 0 yaaW hypothetical protein NC_004431.1:11454-11825 (-) // 97.57 // /// NC_002655.2:10683-11054 (-) // 98.92 // /// NC_002695.1:10683-11054 (-) // 98.92 // /// NC_000913.2:10666-11037 (-) // 100.0 //
890 10 4 4 b0012 9725 14157 SigmaGenosys_000001059 0 htgA positive regulator for sigma 32 heat shock promoters NC_004431.1:11726-12102 (+) // 97.88 // /// NC_002655.2:10955-11331 (+) // 98.14 // /// NC_002695.1:10955-11331 (+) // 98.14 // /// NC_000913.2:10938-11315 (+) // 100.0 //
2442 10 2 10 b0013 10382 14158 SigmaGenosys_000002659 0 yaaI hypothetical protein NC_004431.1:12172-12550 (-) // 96.3 // /// NC_002655.2:11401-11779 (-) // 99.21 // /// NC_002695.1:11401-11779 (-) // 99.21 // /// NC_000913.2:11384-11762 (-) // 100.0 //
4428 1 7 17 b0014 11163 14159 SigmaGenosys_000001060 0 dnaK Chaperone protein dnaK /// chaperone Hsp70 in DNA biosynthesis/cell division NC_004431.1:14457-14848 (+) // 100.0 // /// NC_002655.2:13691-14082 (+) // 99.74 // /// NC_002695.1:13691-14082 (+) // 99.74 // /// NC_000913.2:13674-14065 (+) // 100.0 //
938 12 4 4 b0014 11163 14159 SigmaGenosys_000001060 1 dnaK Chaperone protein dnaK /// chaperone Hsp70 in DNA biosynthesis/cell division NC_004431.1:14457-14848 (+) // 100.0 // /// NC_002655.2:13691-14082 (+) // 99.74 // /// NC_002695.1:13691-14082 (+) // 99.74 // /// NC_000913.2:13674-14065 (+) // 100.0 //
986 10 10 4 b0015 13168 14160 SigmaGenosys_000001061 0 dnaJ Chaperone protein dnaJ /// chaperone with DnaK; heat shock protein NC_004431.1:15685-16062 (+) // 97.08 // /// NC_002655.2:14919-15296 (+) // 99.2 // /// NC_002695.1:14919-15296 (+) // 99.2 // /// NC_000913.2:14902-15279 (+) // 100.0 //
174 12 8 1 b0016 14445 14161 SigmaGenosys_000000308 0 yi81_3 /// yi81_2 /// yi81_1 putative transposase insL for insertion sequence IS186 /// IS186 hypothetical protein /// IS186 hypothetical protein NC_000913.2:2513069-2513432 (+) // 100.0 // /// NC_000913.2:608004-608367 (+) // 100.0 // /// NC_000913.2:16161-16524 (+) // 100.0 //
2490 12 2 10 b0017 14869 14162 SigmaGenosys_000002660 0 yi82_1 IS186 and IS421 hypothetical protein NC_000913.2:2512800-2513041 (-) // 100.0 // /// NC_000913.2:607735-607976 (-) // 100.0 // /// NC_000913.2:15892-16133 (-) // 100.0 //
1034 12 10 4 b0018 15751 14163 SigmaGenosys_000001062 0 mokC regulatory peptide whose translation enables hokC (gef) expression NC_004431.1:16191-16390 (-) // 99.0 // /// NC_002655.2:15424-15624 (-) // 99.5 // /// NC_002695.1:15424-15624 (-) // 99.5 // /// NC_000913.2:16756-16956 (-) // 100.0 //
423 6 11 2 b0019 16489 14164 SigmaGenosys_000000633 0 nhaA Na+/H antiporter, pH dependent NC_004431.1:21648-22016 (+) // 93.21 // /// NC_002655.2:16955-17323 (+) // 99.73 // /// NC_002695.1:16955-17323 (+) // 99.73 // /// NC_000913.2:18287-18655 (+) // 100.0 //

Total number of rows: 5021

Table truncated, full table size 1352 Kbytes.




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