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Platform GPL3847 Query DataSets for GPL3847
Status Public on Jun 13, 2006
Title Affymetrix S. pombe Tiling 1.0FR Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Schizosaccharomyces pombe
Manufacturer Affymetrix
Manufacture protocol 20bp resolution tiling array for S.pombe. Including repetitive sequences such as centeromere and mat.
Catalog number 900647
 
Description The S. pombe tiling Array consists of 6 million probe pairs tiled through the complete Schizosaccharomyces pombe genome. Probes are tiled for both strands of the genome at an average of 20 base pair resolution, as measured from the central position of adjacent 25-mer oligos, creating an overlap of approximately 5 base pairs on adjacent probes. The information of oligo probes on the arrays (sequence and location on the chip) is available from Affymetrix.
 
Contributor(s) Shirahige K, Katou Y, Itoh T
Submission date Jun 08, 2006
Last update date Sep 04, 2008
Contact name Katsuhiko Shirahige
E-mail(s) kshirahi@iam.u-tokyo.ac.jp
Phone +81-3-5842-0756
Fax +81-3-5842-0757
URL http://www.iam.u-tokyo.ac.jp/chromosomeinformatics/
Organization name The University of Tokyo
Department Research Center for Epigenetic Disease
Lab Laboratory of Genome Structure and Function
Street address 1-1-1 Yayoi
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-0032
Country Japan
 
Samples (19) GSM119295, GSM119296, GSM119297, GSM119298, GSM119299, GSM150159 
Series (3)
GSE5257 Pcs1 and Mde4 are inner centromere proteins required to prevent merotelic kinetochore orientation
GSE6523 Genome-wide localization of ORC and MCM binding sites and identification of replication origins in S. pombe
GSE11102 A DNA polymerase α accessory protein, Mcl1, is required for propagation of centromere structures in fission yeast

Data table header descriptions
ID
GB_ACC GeneBank Accession number
START Start nucleotide number of the locus
END End nucleotide number of the locus
DESCRIPTION
GB_RANGE

Data table
ID GB_ACC START END DESCRIPTION GB_RANGE
MT_7300 NC_001326.1 7201 7400 Mitochondrion of Shizosaccharomyces cerevisiae NC_001326.1[7201..7400]
1_0 NC_003424.2 1 100 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1..100]
1_100 NC_003424.2 1 200 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1..200]
1_200 NC_003424.2 101 300 Chromosome I of Shizosaccharomyces pombe NC_003424.2[101..300]
1_300 NC_003424.2 201 400 Chromosome I of Shizosaccharomyces pombe NC_003424.2[201..400]
1_400 NC_003424.2 301 500 Chromosome I of Shizosaccharomyces pombe NC_003424.2[301..500]
1_500 NC_003424.2 401 600 Chromosome I of Shizosaccharomyces pombe NC_003424.2[401..600]
1_600 NC_003424.2 501 700 Chromosome I of Shizosaccharomyces pombe NC_003424.2[501..700]
1_700 NC_003424.2 601 800 Chromosome I of Shizosaccharomyces pombe NC_003424.2[601..800]
1_800 NC_003424.2 701 900 Chromosome I of Shizosaccharomyces pombe NC_003424.2[701..900]
1_900 NC_003424.2 801 1000 Chromosome I of Shizosaccharomyces pombe NC_003424.2[801..1000]
1_1000 NC_003424.2 901 1100 Chromosome I of Shizosaccharomyces pombe NC_003424.2[901..1100]
1_1100 NC_003424.2 1001 1200 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1001..1200]
1_1200 NC_003424.2 1101 1300 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1101..1300]
1_1300 NC_003424.2 1201 1400 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1201..1400]
1_1400 NC_003424.2 1301 1500 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1301..1500]
1_1500 NC_003424.2 1401 1600 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1401..1600]
1_1600 NC_003424.2 1501 1700 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1501..1700]
1_1700 NC_003424.2 1601 1800 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1601..1800]
1_1800 NC_003424.2 1701 1900 Chromosome I of Shizosaccharomyces pombe NC_003424.2[1701..1900]

Total number of rows: 125552

Table truncated, full table size 13295 Kbytes.






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