GEO Accession viewer

Data table
ID	probeset_id	seqname	strand	start	stop	total_probes	gene_assignment	mrna_assignment	swissprot	unigene	GO_biological_process	GO_cellular_component	GO_molecular_function	pathway	protein_domains	category	locus type	notes	HGNC_Symbol	SPOT_ID	ORF
TSUnmapped00001000.rn.1	TSUnmapped00001000.rn.1	---	---	---	---	3	"XM_003752179 // LOC100911511 // homeobox protein Hox-A6-like (LOC100911511), transcript variant X2, mRNA // --- // ---"	"XM_003752179 // unmapped // homeobox protein Hox-A6-like (LOC100911511), transcript variant X2, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0045944 // positive regulation of transcription by RNA polymerase II // Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH]"	---	---	---	---	main->unmapped	Coding	---	LOC100911511	TSUnmapped00001000.rn.1	LOC100911511
TSUnmapped00001001.rn.1	TSUnmapped00001001.rn.1	---	---	---	---	3	"XM_006257703 // LOC100911511 // homeobox protein Hox-A6-like (LOC100911511), transcript variant X1, mRNA // --- // ---"	"XM_006257703 // unmapped // homeobox protein Hox-A6-like (LOC100911511), transcript variant X1, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0045944 // positive regulation of transcription by RNA polymerase II // Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH]"	---	---	---	---	main->unmapped	Coding	---	LOC100911511	TSUnmapped00001001.rn.1	LOC100911511
TSUnmapped00001002.rn.1	TSUnmapped00001002.rn.1	---	---	---	---	3	"XM_006257709 // LOC100911668 // homeobox protein Hox-A10-like (LOC100911668), transcript variant X1, mRNA // --- // ---"	"XM_006257709 // unmapped // homeobox protein Hox-A10-like (LOC100911668), transcript variant X1, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006355 // regulation of transcription, DNA-templated // Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"	"--- // GO:0005634 // nucleus // A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"	"--- // GO:0043565 // sequence-specific DNA binding // Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl]"	---	---	main->unmapped	Coding	---	LOC100911668	TSUnmapped00001002.rn.1	LOC100911668
TSUnmapped00001003.rn.1	TSUnmapped00001003.rn.1	---	---	---	---	3	"XM_006257710 // LOC100911668 // homeobox protein Hox-A10-like (LOC100911668), transcript variant X2, mRNA // --- // ---"	"XM_006257710 // unmapped // homeobox protein Hox-A10-like (LOC100911668), transcript variant X2, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006355 // regulation of transcription, DNA-templated // Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"	"--- // GO:0005634 // nucleus // A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"	"--- // GO:0043565 // sequence-specific DNA binding // Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl]"	---	---	main->unmapped	Coding	---	---	TSUnmapped00001003.rn.1
TSUnmapped00001004.rn.1	TSUnmapped00001004.rn.1	---	---	---	---	3	"XM_008773907 // LOC103694910 // GPI mannosyltransferase 1 (LOC103694910), mRNA // --- // ---"	"XM_008773907 // unmapped // GPI mannosyltransferase 1 (LOC103694910), mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006506 // GPI anchor biosynthetic process // The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. [GOC:go_curators, ISBN:0198547684]"	--- // GO:0005789 // endoplasmic reticulum membrane // The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah]	---	---	---	main->unmapped	Coding	---	LOC103694910	TSUnmapped00001004.rn.1	LOC103694910
TSUnmapped00001005.rn.1	TSUnmapped00001005.rn.1	---	---	---	---	3	"XM_003752252 // Sox1 // SRY box 1 (Sox1), partial mRNA // --- // ---"	"XM_003752252 // unmapped // SRY box 1 (Sox1), partial mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0001764 // neuron migration // The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature. [CL:0000540, GOC:go_curators]"	"--- // GO:0005634 // nucleus // A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"	"--- // GO:0000978 // RNA polymerase II proximal promoter sequence-specific DNA binding // Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter. [GOC:pg, GOC:txnOH]"	---	---	main->unmapped	Coding	---	Sox1	TSUnmapped00001005.rn.1	Sox1
TSUnmapped00001006.rn.1	TSUnmapped00001006.rn.1	---	---	---	---	3	"XM_008773776 // LOC103694840 // transmembrane protein 115-like (LOC103694840), mRNA // --- // ---"	"XM_008773776 // unmapped // transmembrane protein 115-like (LOC103694840), mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006890 // retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum // The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524]"	"--- // GO:0005794 // Golgi apparatus // A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732]"	---	---	---	main->unmapped	Coding	---	LOC103694840	TSUnmapped00001006.rn.1	LOC103694840
TSUnmapped00001007.rn.1	TSUnmapped00001007.rn.1	---	---	---	---	3	"XM_008773782 // LOC103694845 // transmembrane protein 115-like (LOC103694845), mRNA // --- // ---"	"XM_008773782 // unmapped // transmembrane protein 115-like (LOC103694845), mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006890 // retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum // The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524]"	"--- // GO:0005794 // Golgi apparatus // A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732]"	---	---	---	main->unmapped	Coding	---	LOC103694845	TSUnmapped00001007.rn.1	LOC103694845
TSUnmapped00001008.rn.1	TSUnmapped00001008.rn.1	---	---	---	---	3	"XM_008773783 // LOC100910452 // transmembrane protein 223-like (LOC100910452), mRNA // --- // ---"	"XM_008773783 // unmapped // transmembrane protein 223-like (LOC100910452), mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0007399 // nervous system development // The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state. [GOC:dgh]"	---	---	---	---	main->unmapped	Coding	---	---	TSUnmapped00001008.rn.1
TSUnmapped00001009.rn.1	TSUnmapped00001009.rn.1	---	---	---	---	3	"XM_008773792 // LOC103694852 // ribonuclease K6-like (LOC103694852), transcript variant X5, mRNA // --- // ---"	"XM_008773792 // unmapped // ribonuclease K6-like (LOC103694852), transcript variant X5, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0045087 // innate immune response // Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]"	---	--- // GO:0003676 // nucleic acid binding // Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]	---	---	main->unmapped	Coding	---	LOC103694852	TSUnmapped00001009.rn.1	LOC103694852
TSUnmapped00001010.rn.1	TSUnmapped00001010.rn.1	---	---	---	---	3	"XM_008773791 // LOC103694852 // ribonuclease K6-like (LOC103694852), transcript variant X4, mRNA // --- // ---"	"XM_008773791 // unmapped // ribonuclease K6-like (LOC103694852), transcript variant X4, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0045087 // innate immune response // Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]"	---	--- // GO:0003676 // nucleic acid binding // Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]	---	---	main->unmapped	Coding	---	LOC103694852	TSUnmapped00001010.rn.1	LOC103694852
TSUnmapped00001011.rn.1	TSUnmapped00001011.rn.1	---	---	---	---	3	"XM_017602509 // LOC103694852 // ribonuclease K6-like (LOC103694852), transcript variant X2, mRNA // --- // ---"	"XM_017602509 // unmapped // ribonuclease K6-like (LOC103694852), transcript variant X2, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0045087 // innate immune response // Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]"	---	--- // GO:0003676 // nucleic acid binding // Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]	---	---	main->unmapped	Coding	---	LOC103694852	TSUnmapped00001011.rn.1	LOC103694852
TSUnmapped00001012.rn.1	TSUnmapped00001012.rn.1	---	---	---	---	3	"XM_008773787 // LOC103694852 // ribonuclease K6-like (LOC103694852), transcript variant X1, mRNA // --- // ---"	"XM_008773787 // unmapped // ribonuclease K6-like (LOC103694852), transcript variant X1, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0045087 // innate immune response // Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]"	---	--- // GO:0003676 // nucleic acid binding // Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]	---	---	main->unmapped	Coding	---	LOC103694852	TSUnmapped00001012.rn.1	LOC103694852
TSUnmapped00001013.rn.1	TSUnmapped00001013.rn.1	---	---	---	---	3	"XM_008773788 // LOC103694852 // ribonuclease K6-like (LOC103694852), transcript variant X3, mRNA // --- // ---"	"XM_008773788 // unmapped // ribonuclease K6-like (LOC103694852), transcript variant X3, mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0045087 // innate immune response // Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]"	---	--- // GO:0003676 // nucleic acid binding // Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]	---	---	main->unmapped	Coding	---	LOC103694852	TSUnmapped00001013.rn.1	LOC103694852
TSUnmapped00001014.rn.1	TSUnmapped00001014.rn.1	---	---	---	---	3	"XM_008773814 // LOC103694865 // TATA-binding protein-associated factor 2N-like (LOC103694865), mRNA // --- // ---"	"XM_008773814 // unmapped // TATA-binding protein-associated factor 2N-like (LOC103694865), mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006355 // regulation of transcription, DNA-templated // Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"	---	"--- // GO:0003723 // RNA binding // Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"	---	---	main->unmapped	Coding	---	LOC103694865	TSUnmapped00001014.rn.1	LOC103694865
TSUnmapped00001015.rn.1	TSUnmapped00001015.rn.1	---	---	---	---	3	"XM_008773804 // LOC108348322 // GAS2-like protein 2 (LOC108348322), mRNA // --- // ---"	"XM_008773804 // unmapped // GAS2-like protein 2 (LOC108348322), mRNA // --- // --- // --- // --- // --- // ---"	---	---	--- // GO:0001578 // microtubule bundle formation // A process that results in a parallel arrangement of microtubules. [GOC:dph]	"--- // GO:0005737 // cytoplasm // All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"	"--- // GO:0008017 // microtubule binding // Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc]"	---	---	main->unmapped	Coding	---	LOC108348322	TSUnmapped00001015.rn.1	LOC108348322
TSUnmapped00001016.rn.1	TSUnmapped00001016.rn.1	---	---	---	---	3	"XM_008773811 // LOC103694864 // matrix metalloproteinase-28-like (LOC103694864), mRNA // --- // ---"	"XM_008773811 // unmapped // matrix metalloproteinase-28-like (LOC103694864), mRNA // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006508 // proteolysis // The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"	"--- // GO:0031012 // extracellular matrix // A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. [GOC:BHF, GOC:mah, GOC:rph, NIF_Subcellular:nlx_subcell_20090513, PMID:21123617, PMID:28089324]"	"--- // GO:0004222 // metalloendopeptidase activity // Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE]"	---	---	main->unmapped	Coding	---	LOC103694864	TSUnmapped00001016.rn.1	LOC103694864
TSUnmapped00001017.rn.1	TSUnmapped00001017.rn.1	---	---	---	---	3	"XM_008773818 // LOC103694869 // isochorismatase domain-containing protein 1 (LOC103694869), mRNA // --- // ---"	"XM_008773818 // unmapped // isochorismatase domain-containing protein 1 (LOC103694869), mRNA // --- // --- // --- // --- // --- // ---"	---	---	---	---	"--- // GO:0003824 // catalytic activity // Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"	---	---	main->unmapped	Coding	---	LOC103694869	TSUnmapped00001017.rn.1	LOC103694869
TSUnmapped00001595.rn.1	TSUnmapped00001595.rn.1	---	---	---	---	3	"AY445668.1 // Rt1-L3 // MHC class Ib antigen (Rt1-L3) gene, partial cds // --- // ---"	"AY445668.1 // unmapped // MHC class Ib antigen (Rt1-L3) gene, partial cds // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0006955 // immune response // Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]"	---	"--- // GO:0003823 // antigen binding // Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen. [GOC:jl, ISBN:0198506732, ISBN:0721662544]"	---	---	main->unmapped	Unassigned	---	---	TSUnmapped00001595.rn.1
TSUnmapped00001596.rn.1	TSUnmapped00001596.rn.1	---	---	---	---	3	"AAHX01105512.1 // 70498282 // strain BN chromosome Un CRA_213000034373894, whole genome shotgun sequence // --- // ---"	"AAHX01105512.1 // unmapped // strain BN chromosome Un CRA_213000034373894, whole genome shotgun sequence // --- // --- // --- // --- // --- // ---"	---	---	"--- // GO:0008150 // biological_process // A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. [GOC:pdt]"	"--- // GO:0005575 // cellular_component // A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). [GOC:pdt, NIF_Subcellular:sao-1337158144]"	"--- // GO:0003674 // molecular_function // A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. [GOC:pdt]"	---	---	main->unmapped	Unassigned	---	---	TSUnmapped00001596.rn.1