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Platform GPL3426 Query DataSets for GPL3426
Status Public on May 03, 2006
Title Eurogentec AG S. pombe ORF array 10k (1st batch)
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Schizosaccharomyces pombe
Manufacturer Eurogentec AG
Manufacture protocol Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). We normally achieve a success rate of 93 % of PCR reactions. For the failed PCR reactions we perform three different protocols of PCR conditions, which include different MgCl2 concentrations and different Taq polymerase. We should normally get an additional 2 % working and reach a success rate of 95 % in total. We check 5 % of the total oligos by Mass Spectrometry and will re-synthesize maximum 2 % of the oligos based on a newly designed primer. We will perform the PCR reactions with the new designed oligonucleotides with the standard PCR protocol. Following this process we reach usually 97 % success rate.
Support glass
 
Description 4976 ORFs spotted in duplicate on glass slide
Keywords = yeast ORF DNA microarray
 
Web link http://www.eurogentec.com/
Submission date Feb 03, 2006
Last update date May 03, 2006
Contact name Anthony Wright
E-mail(s) yongtao.xue.franzen@ki.se
Organization name Karolinska Institute
Lab Anthony Wright
Street address Blickagången 6
City Huddinge
ZIP/Postal code 141 57
Country Sweden
 
Samples (6) GSM118250, GSM118251, GSM118252, GSM118253, GSM118254, GSM118255
Series (3)
GSE5218 Comparison of gene regulation by Gcn5 under KCl stress in S. cerevisiae and S. pombe
GSE5227 Stress-specific role of the fission yeast Gcn5 acetylatransferase in programming a subset of stress-response genes
GSE16556 Role of Gcn5 in KCl stress adaptation in S. cerevisiae and S. pombe: transcriptional and genomic analyses

Data table header descriptions
ID
name name of nucleotide
ORF
SPOT_ID
Meta Row spot x position (block)
Meta Column spot y position (block)
Row spot x position (within block)
Column spot y position (within block)

Data table
ID name ORF SPOT_ID Meta Row Meta Column Row Column
1 ade8 ade8 1 1 1 1
2 ade8 ade8 1 1 1 2
3 SPBC26H8.14c SPBC26H8.14c 1 1 1 3
4 SPBC26H8.14c SPBC26H8.14c 1 1 1 4
5 SPBC26H8.06 SPBC26H8.06 1 1 1 5
6 SPBC26H8.06 SPBC26H8.06 1 1 1 6
7 SPBC26H8.04c SPBC26H8.04c 1 1 1 7
8 SPBC26H8.04c SPBC26H8.04c 1 1 1 8
9 sec9 sec9 1 1 1 9
10 sec9 sec9 1 1 1 10
11 SPBC1677.03c SPBC1677.03c 1 1 1 11
12 SPBC1677.03c SPBC1677.03c 1 1 1 12
13 SPBC1604.01 SPBC1604.01 1 1 1 13
14 SPBC1604.01 SPBC1604.01 1 1 1 14
15 SPBC13G1.03c SPBC13G1.03c 1 1 1 15
16 SPBC13G1.03c SPBC13G1.03c 1 1 1 16
17 SPBC13G1.01c SPBC13G1.01c 1 1 1 17
18 SPBC13G1.01c SPBC13G1.01c 1 1 1 18
19 SPBC25D12.06 SPBC25D12.06 1 1 1 19
20 SPBC25D12.06 SPBC25D12.06 1 1 1 20

Total number of rows: 9984

Table truncated, full table size 349 Kbytes.




Download family Format
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Supplementary data files not provided

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