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Platform GPL32785 Query DataSets for GPL32785
Status Public on Jan 01, 2024
Title Agilent-086353 Corynebacterium glutamicum Cgl_NC003450.3_v2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Corynebacterium glutamicum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Whole transcriptome of C. glutamicum ATCC 13032 + heterologous sequences, NCBI genome, version from 10. March, 2020
Arrays of this design have barcodes that begin with 16086353 or 2586353.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 27, 2022
Last update date Jan 01, 2024
Contact name Michael Kohlstedt
E-mail(s) michael.kohlstedt@uni-saarland.de
Organization name Saarland University
Street address Campus A1.5
City Saarbruecken
ZIP/Postal code 66123
Country Germany
 
Samples (12) GSM6689671, GSM6689672, GSM6689673, GSM6689674, GSM6689675, GSM6689676 
Series (3)
GSE216733 Gene expression in glucose-grown L-pipecolic acid production strains C.glutamicum LPA-1A and LPA-5 compared to the non-L-pipecolic acid-producing strain C. glutamicum LPA-0 [1]
GSE216735 Gene expression in glucose-grown L-pipecolic acid production strains C.glutamicum LPA-1A and LPA-5 compared to the non-L-pipecolic acid-producing strain C. glutamicum LPA-0 [2]
GSE216736 Gene expression in glucose-grown L-pipecolic acid production strains C.glutamicum LPA-1A and LPA-5 compared to the non-L-pipecolic acid-producing strain C. glutamicum LPA-0

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 CUST_422_PI448095888 CUST_422_PI448095888 FALSE CGL_RS00750 unmapped ATTCAGATCTCAAAGATGCCGAATGGATCTCCGTTGCTGCAATTAACCGCTCACAAAATT
5 192 320 CUST_3058_PI448095888 CUST_3058_PI448095888 FALSE CGL_RS05265 unmapped CAGATACGGAAGGTCCGCTGCGCATCAACTTAGATGATGTGGAAGTCATTGAAACTGAAG
6 192 318 CUST_2406_PI448095888 CUST_2406_PI448095888 FALSE CGL_RS04170 unmapped GTTTACAAGAACTACGATCCACGTGCAGCAATCGTCAAGGAGACCGCACACGAGATC
7 192 316 CUST_8009_PI448095888 CUST_8009_PI448095888 FALSE CGL_RS13785 unmapped CATGGGACGAAGACATCACCGACTGCAAGACCTTCGAGGATCTTCCACAAAAG
8 192 314 CUST_3029_PI448095888 CUST_3029_PI448095888 FALSE CGL_RS05225 unmapped CGATTGATGAGTCTTTGGCGAAAATTGGCTTGGATTATGTCGATCTGATGCTCATTCACT
9 192 312 CUST_5118_PI448095888 CUST_5118_PI448095888 FALSE CGL_RS08810 unmapped ATTGCAGTGAACTCTGATACCTCAGAAAACGCTGCTGTTAATCCAGTTCTGTCCGATATT
10 192 310 CUST_2141_PI448095888 CUST_2141_PI448095888 FALSE CGL_RS03695 unmapped CGTCAGCGAATTCCTTGAAAAGACCGAAGATCCACCAACCGATCAGATCAACG
11 192 308 CUST_6128_PI448095888 CUST_6128_PI448095888 FALSE CGL_RS10500 unmapped CAGGTGGAAAACCATAAGCTTCCAACGGTGGCTAGTCATTTAGGGTTTGAGCTGAAAAAC
12 192 306 CUST_1968_PI448095888 CUST_1968_PI448095888 FALSE CGL_RS03405 unmapped GAAGAGATGTCCCGACAGGTGCAACCAATCGTCGAAAAGCTAGTGCAGATT
13 192 304 CUST_8429_PI448095888 CUST_8429_PI448095888 FALSE CGL_RS14500 unmapped GAACTTGGCTGGAATGCTCTCTATTTAGATCGTTCCGGAACCGATCCACGC
14 192 302 CUST_4796_PI448095888 CUST_4796_PI448095888 FALSE CGL_RS08240 unmapped GTTCTTCCTCAACTACGAGGATTCCCCACTGGCACCGAACTACACCTACTTC
15 192 300 CUST_6944_PI448095888 CUST_6944_PI448095888 FALSE CGL_RS11880 unmapped CATCACCGTCAACGTTGATGTGATGGCAAGTCGCGTCAATGGACCAAC
16 192 298 CUST_4793_PI448095888 CUST_4793_PI448095888 FALSE CGL_RS08235 unmapped GATGATTTGGTGGAATACATCACCACGAATAATTTGAGCGTGGACAAGATTGTGCTCACC
17 192 296 CUST_7473_PI448095888 CUST_7473_PI448095888 FALSE CGL_RS12875 unmapped CTTGGACCAGGAAAGCGTCTCTACGGACTGCTTCCAACCAACGAACTC
18 192 294 CUST_236_PI448095888 CUST_236_PI448095888 FALSE CGL_RS00440 unmapped CTTTCTTAACTCTGCAAAAACCAAGACCGTAGCCCTCACCGCAACCTTCGTTG
19 192 292 CUST_6172_PI448095888 CUST_6172_PI448095888 FALSE CGL_RS10575 unmapped TCTCGGATACTTTATTAACCCCCTGTTAAGTGTCGTGCTTGGCATTGTGTTCTTCAAAGA
20 192 290 CUST_3129_PI448095888 CUST_3129_PI448095888 FALSE CGL_RS05385 unmapped ATCATTGACCGGATCATCAGTATTACTGACGGCGAAGATGTCCAACCTGCAGAGTTGATC

Total number of rows: 62976

Table truncated, full table size 9273 Kbytes.




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