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Platform GPL32019 Query DataSets for GPL32019
Status Public on Mar 05, 2022
Title Intestinal Microecology Detection Microarray Version 4.0
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism human gut metagenome
Manufacturer Halgen Technology co.,ltd
Manufacture protocol 1.The Oligo probe was dissolved in a 96-well plate with 0.5×TE pH8.0 to a concentration of 200um.
2.Transfer 7.5ul of each probe to a new 96-well plate, incubate at 37°C with 1000units of T4 PNK phosphorylase in 1×T4 PNK phosphorylation buffer solution for 2 hours, and the total volume is 15ul.
3. Transfer the phosphorylated probe to 30°C, add 4.5ul of 500μM linker sequence, use 1000units of T4 DNA ligase and incubate for 20 hours in 1×T4 DNA ligation buffer, the total volume is 35ul.
4. After the probe is ligated, precipitate with isopropanol and dissolve in 50ul of 0.1M NaOH solution.
5. Modified with 8mM alkylating agent for 2 hours at 65°C, then precipitated and dissolved in 0.1M NaOH (containing 0.5M NaCl) at a concentration of 350-400ng/ul.
6. Transfer the probes to a Genetix 394-well plate and place them in the sample wells of the Qarray2 chip spotter.
7. Start the Qarray2 spotting machine to automatically spot samples. After completion, the chip is subjected to constant temperature and humidity treatment to help the probe be better fixed, and then the residual salt on the surface is washed off for use. The remaining probes were sealed with aluminum foil and stored frozen at -20°C.
 
 
Submission date Mar 04, 2022
Last update date Mar 05, 2022
Contact name xuan peng
E-mail(s) 206511008@csu.edu.cn
Organization name Kaifu District, Changsha City, Hunan Province
Street address 88 Xiangya Road
City Changsha City of Hunan Province
State/province Hunan
ZIP/Postal code 421600
Country China
 
Samples (85) GSM5932135, GSM5932136, GSM5932137, GSM5932138, GSM5932139, GSM5932140 
Series (1)
GSE197904 Gut microbiota: uterine fibroids patients vs. healthy control

Data table header descriptions
ID names of probes for intestinal microbiome
GB_ACC GenBank Accession number
Species Species corresponding to GB_ACC
SPOT_ID

Data table
ID GB_ACC Species SPOT_ID
10 AJ243421.1 Arthrobacter albus
20 AJ278694.1 Alloscardovia omnicolens
30 AF537599.1 Corynebacterium mucifaciens
40 AX109305.1 Corynebacterium minutissimum
50 HF952918.1 Clostridium polynesiense
60 GQ493810.1 GQ493810.1
100 KR857398.1 Clostridium vincentii
119 MK908394.1 Senegalimassilia anaerobia
200 CP069440.1 Bacteroides coprophilus
300 GQ869564.1 Corynebacterium sp._1152
400 AB661433.1 Roseburia faecis
500 AB470617.1 Corynebacterium pseudodiphtheriticum
600 GQ493869.1 GQ493869.1
1000 AM062694.1 Staphylococcus vitulinus
3000 HE983827.1 Corynebacterium frankenforstense
4000 AB272619.1 Cedecea davisae
5000 HG726039.1 Clostridium saudiense
6000 AY916143 AY916143
10000 AF123384.1 Clostridium symbiosum
20000 AB006923.1 Bacillus circulans

Total number of rows: 1390

Table truncated, full table size 51 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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