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Platform GPL26632 Query DataSets for GPL26632
Status Public on May 08, 2019
Title Duke/RG_uPBM_6x80k_with_crystal_structure_probes
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer Agilent Technologies
Manufacture protocol In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers, plus custom sequences containing protein-DNA binding sites reported in X-ray crystal structures
 
 
Submission date May 07, 2019
Last update date May 08, 2019
Contact name Raluca Gordan
E-mail(s) raluca.gordan@duke.edu
Organization name Duke University
Department Center for Genomic and Computational Biology
Street address 101 Science Dr, CIEMAS 2179
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Samples (1) GSM3755000
Series (2)
GSE130835 QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants V
GSE130837 QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants

Data table header descriptions
ID
Column
Row
Name
SPOT_ID
SEQUENCE

Data table
ID Column Row Name SPOT_ID SEQUENCE
1_1 1 1 GE_BrightCorner GE_BrightCorner
2_1 2 1 GE_BrightCorner GE_BrightCorner
3_1 3 1 DarkCorner DarkCorner
4_1 4 1 DarkCorner DarkCorner
5_1 5 1 dBr_Jan07_14151 dBr_Jan07_14151 ATAGCGACGTCACTGCAGTGGACCACTTCTAAATTGGTCTGTGTTCCGTTGTCCGTGCTG
6_1 6 1 dBr_9mer_0107_06375 dBr_9mer_0107_06375 ACGTCACACTAAGCCTAATGCAGCGCTATATCATTCGTCTGTGTTCCGTTGTCCGTGCTG
7_1 7 1 Ctrl_Crystal_005432 Ctrl_Crystal_005432 GCGGGCATGCCCGCGGGGATGCCCGCGCACACATACGTCTGTGTTCCGTTGTCCGTGCTG
8_1 8 1 dBr_Jan07_36509 dBr_Jan07_36509 GCAGGTCGATCCCCCGTGTGCGTTTTTCGATGATCCGTCTGTGTTCCGTTGTCCGTGCTG
9_1 9 1 dBr_9mer_0107_03879 dBr_9mer_0107_03879 GCCCTCTCTAAGCAGTAGTCTTGTGTCGACTATATGGTCTGTGTTCCGTTGTCCGTGCTG
10_1 10 1 dBr_Jan07_09579 dBr_Jan07_09579 AAGTGGTCTGCCCCCATGTACTGGCTCTGAACCTACGTCTGTGTTCCGTTGTCCGTGCTG
11_1 11 1 dBr_Jan07_18824 dBr_Jan07_18824 CTCTTAAAGTGGGCACAAATCCGGTCGAGGGTATACGTCTGTGTTCCGTTGTCCGTGCTG
12_1 12 1 dBr_Jan07_02483 dBr_Jan07_02483 ATACGGAAGTATATCCACTTAGAAAGCTTCGGCAGAGTCTGTGTTCCGTTGTCCGTGCTG
13_1 13 1 ERCC-00075_180 ERCC-00075_180
14_1 14 1 dBr_9mer_0107_00678 dBr_9mer_0107_00678 AAATCCATCCCTCCTTCTTACCGTAAAAATTCTACTGTCTGTGTTCCGTTGTCCGTGCTG
15_1 15 1 dBr_Jan07_06858 dBr_Jan07_06858 GGAACAGGGGTACACTTTATGAGACAACTTCAACTGGTCTGTGTTCCGTTGTCCGTGCTG
16_1 16 1 dBr_Jan07_27193 dBr_Jan07_27193 ACGTCTTTGGCCCAGCGGGCTTCCCGAAGTCCAAATGTCTGTGTTCCGTTGTCCGTGCTG
17_1 17 1 dBr_Jan07_19573 dBr_Jan07_19573 TCGTGGAATGCAATAATTGCAGTTATAGCAGGGGTAGTCTGTGTTCCGTTGTCCGTGCTG
18_1 18 1 dBr_Jan07_39153 dBr_Jan07_39153 AAATAGCATCGACCGCATCAAAATGTCTCGGACGAAGTCTGTGTTCCGTTGTCCGTGCTG
19_1 19 1 dBr_9mer_0107_05937 dBr_9mer_0107_05937 AGCGTAATTAGTTTACCTATAGGGGAACTCCAGGGCGTCTGTGTTCCGTTGTCCGTGCTG
20_1 20 1 dBr_Jan07_35575 dBr_Jan07_35575 ACCCACATTATCTTGCAGTCGCAACTACACACGCCTGTCTGTGTTCCGTTGTCCGTGCTG

Total number of rows: 62976

Table truncated, full table size 6651 Kbytes.




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Supplementary data files not provided

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