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Platform GPL26165 Query DataSets for GPL26165
Status Public on Oct 18, 2019
Title 037907-Agilent Fragaria x ananassa FraGenomics 35k [Probe name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Fragaria x ananassa
Manufacturer Agilent
Manufacture protocol http://www.agilent.com/
 
Description This array of 60-mer probes is based on the Nimblegen Array 110713_Fragaria_JMB_exp (GPL23035). The Nimblegen design files attached to this record contain accurate gene description and probe sequence information for this Agilent array. However, the Agilent array does not contain all probes listed in the .ndf file and includes additional probes not listed in the .ndf file. Probe sequences for non-control probes are available in the platform table and in the supplementary file 037907_Annotation.txt available at the foot of this record.
 
Submission date Feb 07, 2019
Last update date Feb 07, 2019
Contact name Francisco Javier Molina-Hidalgo
Organization name University of Cordoba
Department Biochemistry and molecular biology
Street address Edif. Severo Ochoa (C6.) Planta Baja-Ala Norte Campus de Rabanales
City CÓRDOBA
State/province Cordoba
ZIP/Postal code 14071
Country Spain
 
Samples (4) GSM3593872, GSM3593873, GSM3593874, GSM3593875
Series (1)
GSE126220 Transcriptomic studies in the development and ripening of strawberry fruits (Agilent)

Data table header descriptions
ID ProbeName
SystematicName
CONTROL_TYPE
SEQUENCE
SEQ_ID
Description
SPOT_ID

Data table
ID SystematicName CONTROL_TYPE SEQUENCE SEQ_ID Description SPOT_ID
GE_BrightCorner GE_BrightCorner Other * control
DarkCorner DarkCorner Other * control
FragP00175852 gene17538 Probe TCATATACACCCAAACCTGCCAGACTGCGATAACGTTTGGAGCTCTTTTAACGAGCACAA GENE17538 Mediator of RNA polymerase II transcription subunit 13 (probable) GENE17538
FragP00083359 gene08243 Probe GCTATTATAGATTCTTTGGGGTCCCAAAGTGCTCTCTTGCGGCACGAGGTTGCTTATGTG GENE08243 Deoxyhypusine hydroxylase (DOHH) (similar to) GENE08243
FragP00198823 gene19844 Probe TACCCAGAGAAGACAAGTACGTACTACATTGTAAATGTGCCTTACATATTCTCAGCTTGT GENE19844 SEC14-like protein 1 (probable) GENE19844
FragP00244778 gene24476 Probe CAGTGACATTACCAATGGCGGCAAGCTTAGAATCCGAGAGTAGTTCCGCCGCTCCTCCTC GENE24476 60S ribosomal protein L7a (probable) GENE24476
FragP00178973 gene17852 Probe GGACCTCCATTCCTTTGATCGTTTACTGTAGTCTGCCTGCCATCTGTCTTCTGACCGGGA GENE17852 Cellulose synthase A catalytic subunit 2 [UDP-forming] (AtCesA2) (put GENE17852
FragP00059577 gene05852 Probe GGATGTCAAGGATAACCCCGTAATGCTTTATATGAAAGGAGTGCCTAATGCTCCTCAGTG GENE05852 Monothiol glutaredoxin-S15 (AtGrxS15) (similar to) GENE05852
FragP00057743 gene05667 Probe GGTGGGGTTGTACTGGTCAGTCACGACTCTAGGCTTATTTCACGTGTGTGTGAGGATGAA GENE05667 ABC transporter F family member 4 (ABC transporter ABCF.4) (putative) GENE05667
FragP00049971 gene04885 Probe GAGGAGGTGGACTGGCCTTGCTGGTCAGTAGTGAACCTTGGATTGTTGGTGGAGATTTCA GENE04885 Selenoprotein P (SeP), Precursor (probable) GENE04885
FragP00086003 gene08508 Probe TTTGTGCACATTTTCGGATACGAATGCGGCGTTGAAATCGATGAATTTATGAATGGGTTG GENE08508 Exonuclease 1 (probable) GENE08508
FragP00041584 gene04045 Probe TTGGATGGAATGGGAGAAGCGATACCATGCGCATTACAATTCAGATGTCTATGAAGCCGT GENE04045 Something about silencing protein 10 (probable) GENE04045
FragP00307856 gene30816 Probe TGCCTGTGCTCTTGGACTGGCGAGCCGGAGAGCTAGCTCGTTATGCTGCCATGTTGGTGC GENE30816 Zinc finger protein 710 (probable) GENE30816
FragP00326354 gene32675 Probe TGTACCCACCAGCCTCCGACGAGTTGAATACTAGTCTCTACATCGTTCGACAACGCCTGA GENE32675 Palladin (probable) GENE32675
FragP00072384 gene07138 Probe AATGCTGAAGAGATGCCTACAGATCCCGTATCTGACCCTATAAGTGATTCCAAGGTTCTT GENE07138 Putative membrane protein ycf1 (probable) GENE07138
FragP00188678 gene18827 Probe ATCCAAGCATGAGGACTAAGGGGAGTGCGAATTGTACTAGTGTGATTCACTGTTACAAAA GENE18827 BTB/POZ domain-containing protein KCTD6 (probable) GENE18827
FragP00273269 gene27339 Probe ATGATCAATTGAGGAGTGAGTACGAATCAGTTAAACGAACTGCCATCCAACCTGCAACCA GENE27339 Ezrin (probable) GENE27339
FragP00070392 gene06939 Probe GGAGTGTGGCATTTGCTTAGAGCCGTGTACCAAAATGGTCTTGCCTAATTGCTGTCATGA GENE06939 E3 ubiquitin-protein ligase RNF8 A (probable) GENE06939
FragP00160376 gene15980 Probe GGTCAGCATATCAACATTGGGAAGCGCTTGCAGCGCGGATTGCCTAAGGGTAGTGGTGGT GENE15980 Putative disease resistance protein RGA3 (probable) GENE15980
FragP00045997 gene04486 Probe GATGGGTATGAAGATGATCATTTAAGTGTAGCCGATCCCCTTAACCAGATTAATTTGGCA GENE04486 Importin-9 (Imp9) (probable) GENE04486

Total number of rows: 35393

Table truncated, full table size 5472 Kbytes.




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Supplementary data files not provided
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