NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL26118 Query DataSets for GPL26118
Status Public on Mar 13, 2019
Title Agilent-070006 Bacillus subtilis arrau (Bsubt168.sept2014)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bacillus subtilis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16070006 or 2570006.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 29, 2019
Last update date Mar 13, 2019
Contact name Anne de Jong
E-mail(s) anne.de.jong@rug.nl
Phone +31 50 363 2047
Organization name university of Groningen
Department Molecular Genetics
Street address Nijenborgh 7
City Groningen
ZIP/Postal code 9747 AG
Country Netherlands
 
Samples (16) GSM3666555, GSM3666556, GSM3666557, GSM3666558, GSM3666559, GSM3666560 
Series (1)
GSE128187 Phosphosugar stress in Bacillus subtilis: Intracellular accumulation of mannose 6-phosphate derepresed the glcR-phoC operon from repression by GlcR

Data table header descriptions
ID Index; COL_ROW
COL Column
ROW row
NAME Spot identifier
ACCESSION_STRING Accession String
PROBE_NAME
ORF
SPOT_ID control
SEQUENCE

Data table
ID COL ROW NAME ACCESSION_STRING PROBE_NAME ORF SPOT_ID SEQUENCE
1_1 1 1 GE_BrightCorner GE_BrightCorner control
2_1 2 1 GE_BrightCorner GE_BrightCorner control
3_1 3 1 DarkCorner DarkCorner control
4_1 4 1 DarkCorner DarkCorner control
5_1 5 1 yhcQ_NP_388799.1_GeneI... yhcQ_NP_388799.1_GeneI... CUST_928_PI427296488 BSU01730 CTTGACCATGTATTCTCAAATCGTCGCAGATGGTGTTTTGCCTGAAGATGCAGTTGTATC
6_1 6 1 yciC_NP_388218.1_GeneI... yciC_NP_388218.1_GeneI... CUST_337_PI427296488 BSU24580 CATTTTTACAGAATACCGCGCAACCCAGATTTATCTGCAGTGGTTTCTTCAGCAAAACGG
7_1 7 1 ynzB_NP_389657.2_GeneI... ynzB_NP_389657.2_GeneI... CUST_1804_PI427296488 BSU35460 TGAGCTGGTAGATAAACAAAAAAACACAGCAATGCTTGTCATTTTGGCTGAATCTGCTGC
8_1 8 1 catE_NP_388705.2_GeneI... catE_NP_388705.2_GeneI... CUST_834_PI427296488 BSU18910 ATAGGTGCTTTTGAAGAAGCAACGAGCTTTTTCAATGCGAAAATTTGGGCTGAACAGAAA
9_1 9 1 yqkC_NP_390246.1_GeneI... yqkC_NP_390246.1_GeneI... CUST_2417_PI427296488 BSU08500 AAAAGAGGGAGAAGCACCAGCAAGGCGCCAACCTGAAAAAAATGCAGGAAGTTCTTTATT
10_1 10 1 NA NA BSU11930 no information TGCTGCGGGAGATCAAAAGGCTCAACCGTGTATTAAACAAAGTGGATTTTATTAGCACAA
11_1 11 1 NA NA BSU01710 no information AGACGACCTTCCAGTCGGTTTTTTCATTTTACATGCATCAAAAGAAACGCTTGCTTCCTA
12_1 12 1 yyaQ_NP_391955.1_GeneI... yyaQ_NP_391955.1_GeneI... CUST_4142_PI427296488 BSU32090 CCCATTTTGTTCAGGGAAAGGATATTTTCAATTGATTCTCGGCGGTTCAGAGACTTGTCC
13_1 13 1 NA NA BSU39350 no information ATAGAACATGCAGCGTCCTATACGAAACAGCTTTTTCAAGAAATGAGAAAAGTCGTGCCG
14_1 14 1 NA NA BSU24090 no information ACTCTGCTGAAAATAAACTGTATTCCATTGCGCTGGCAATATGCGCATCTGAAGAATACA
15_1 15 1 NM_000185 NM_000185 A_23_P6335 BSU12700 CCGACAACCTCGATCGCAAACACAGGCCATACGATCAAAAGTCTTGTCATTAAAAATGAT
16_1 16 1 yjdI_NP_389088.1_GeneI... yjdI_NP_389088.1_GeneI... CUST_1219_PI427296488 BSU20929 TTGTTGATTGTTGTGCAATTATTTGTTGCCGCCCTTTTATCATTAGTCGGAGTTGAAGCG
17_1 17 1 yjgB_NP_389097.1_GeneI... yjgB_NP_389097.1_GeneI... CUST_1229_PI427296488 BSU17559 AGAACGAGAAAAAGAAGATGGCAGTTCACATACTTTTGAAATTGTTGTTGTGCTAGCCAT
18_1 18 1 NA NA BSU05200 no information TTACACTAATGATGTCTATCGTTGTTGTTTTAGCGGCTGCTAAAGAGTCGCCTGGAGATC
19_1 19 1 ETG07_105829 ETG07_105829 control
20_1 20 1 ylbG_NP_389383.1_GeneI... ylbG_NP_389383.1_GeneI... CUST_1530_PI427296488 BSU11070 ACCCCTTCGTCTTATCAGGTAAAAAGCATAGTCAAGGTTGTGATCTCATGCTCGAAAACA

Total number of rows: 15744

Table truncated, full table size 2226 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap