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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 11, 2018 |
| Title |
NextSeq 550 (Danio rerio) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Danio rerio |
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| Submission date |
Dec 11, 2018 |
| Last update date |
Dec 11, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (470)
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GSM3509161, GSM4176083, GSM4176084, GSM4294466, GSM4294467, GSM4294468
GSM4294469, GSM4294470, GSM4294471, GSM4294472, GSM4294473, GSM4319210, GSM4319211, GSM4319212, GSM4319213, GSM4368051, GSM4368052, GSM4368053, GSM4368054, GSM4368055, GSM4368056, GSM4368057, GSM4368058, GSM4368059, GSM4368060, GSM4368061, GSM4368062, GSM4368063, GSM4368064, GSM4368065, GSM4368066, GSM4368067, GSM4368068, GSM4368069, GSM4368070, GSM4368071, GSM4368072, GSM4368073, GSM4368074, GSM4368075, GSM4368076, GSM4368077, GSM4368078, GSM4368079, GSM4368080, GSM4368081, GSM4368082, GSM4369094, GSM4369095, GSM4369096, GSM4369097, GSM4369098, GSM4369099, GSM4369100, GSM4369101, GSM4369102, GSM4369103, GSM4369104, GSM4369105, GSM4369106, GSM4369107, GSM4369108, GSM4369109, GSM4369110, GSM4369111, GSM4369112, GSM4369113, GSM4369114, GSM4369115, GSM4369116, GSM4369117, GSM4572111, GSM4572112, GSM4572113, GSM4572114, GSM4572115, GSM4572116, GSM4572117, GSM4572118, GSM4572119, GSM4572120, GSM4572121, GSM4572122, GSM4572123, GSM4572124, GSM4572134, GSM4572135, GSM4572136, GSM4572137, GSM4572138, GSM4666851, GSM4666852, GSM4666853, GSM4666854, GSM4666855, GSM4666856, GSM4666857, GSM4666858, GSM4666859, GSM4666860, GSM4666861, GSM4666862, GSM4666863, GSM4666864, GSM4666865, GSM4666866, GSM4666867, GSM4666868, GSM4666869, GSM4666870, GSM4666871, GSM4666872, GSM4666873, GSM4666874, GSM4666875, GSM4666876, GSM4666877, GSM4666878, GSM4666879, GSM4666880, GSM4666881, GSM4666882, GSM4666883, GSM4666884, GSM4666885, GSM4666886, GSM4666887, GSM4666888, GSM4666889, GSM4666890, GSM4666891, GSM4666892, GSM4666893, GSM4666894, GSM4666895, GSM4666896, GSM4666897, GSM4730395, GSM4730396, GSM4730397, GSM4730398, GSM4730399, GSM4730416, GSM4730417, GSM4730418, GSM4730419, GSM4730420, GSM4730421, GSM4770933, GSM4770934, GSM4770935, GSM4770936, GSM4770937, GSM4770938, GSM4770939, GSM4770940, GSM4770941, GSM4770942, GSM4770943, GSM4770944, GSM4770945, GSM4770946, GSM4770947, GSM4770948, GSM4792208, GSM4792209, GSM4792210, GSM4792211, GSM4792212, GSM4792213, GSM4792214, GSM4792215, GSM4792216, GSM5077764, GSM5077765, GSM5077766, GSM5077767, GSM5077768, GSM5077769, GSM5077770, GSM5077771, GSM5077772, GSM5077773, GSM5111040, GSM5111041, GSM5111042, GSM5111043, GSM5111044, GSM5111045, GSM5111046, GSM5111047, GSM5111048, GSM5111049, GSM5111050, GSM5111051, GSM5145706, GSM5145707, GSM5145708, GSM5145709, GSM5258245, GSM5258246, GSM5278621, GSM5278622, GSM5278623, GSM5278624, GSM5278625, GSM5278626, GSM5402428, GSM5402429, GSM5402431, GSM5402442, GSM5402443, GSM5513440, GSM5513441, GSM5548460, GSM5548461, GSM5548462, GSM5548463, GSM5548464, GSM5548465, GSM5548466, GSM5548467, GSM5548468, GSM5548469, GSM5548470, GSM5548471, GSM5548507, GSM5548508, GSM5548509, GSM5548510, GSM5548511, GSM5548512, GSM5548513, GSM5548514, GSM5548524, GSM5548525, GSM5548526, GSM5548527, GSM5548528, GSM5548529, GSM5548530, GSM5548531, GSM5548532, GSM5548533, GSM5548534, GSM5567788, GSM5567789, GSM5567790, GSM5567791, GSM5567792, GSM5567793, GSM5567794, GSM5567795, GSM5567796, GSM5567797, GSM5567798, GSM5567799, GSM5567800, GSM5567801, GSM5567802, GSM5567803, GSM5567804, GSM5567805, GSM5567806, GSM5567807, GSM5567808, GSM5567809, GSM5567810, GSM5567811, GSM5567812, GSM5567813, GSM5567814, GSM5567815, GSM5567816, GSM5567817, GSM5585125, GSM5585126, GSM5769441, GSM5769442, GSM5769443, GSM5769444, GSM5769445, GSM5769446, GSM5769447, GSM5769448, GSM5769449, GSM5769450, GSM5769451, GSM5769452, GSM5769453, GSM5769454, GSM5769455, GSM5769456, GSM5769457, GSM5769458, GSM5769459, GSM5769460, GSM5769461, GSM5769462, GSM5769463, GSM5795972, GSM5795973, GSM5795974, GSM5795975, GSM5795976, GSM5795977, GSM6106857, GSM6106858, GSM6106859, GSM6106860, GSM6106861, GSM6106862, GSM6106863, GSM6106864, GSM6106865, GSM6106866, GSM6106867, GSM6106868, GSM6127476, GSM6127477, GSM6127478, GSM6424704, GSM6424705, GSM6502513, GSM6502514, GSM6502515, GSM6502516, GSM6502517, GSM6502518, GSM6502519, GSM6502520, GSM6645201, GSM6645202, GSM6645203, GSM6645204, GSM6645205, GSM6645206, GSM6645207, GSM6645208, GSM6645209, GSM6645210, GSM6645211, GSM6645212, GSM6645213, GSM6645214, GSM6645215, GSM6645216, GSM6645217, GSM6645218, GSM6645219, GSM6645220, GSM6645221, GSM6645222, GSM6645223, GSM6645224, GSM6685234, GSM6685265, GSM6685266, GSM7017316, GSM7017317, GSM7017318, GSM7017319, GSM7017320, GSM7017321, GSM7017322, GSM7017323, GSM7017324, GSM7017325, GSM7029635, GSM7106562, GSM7106563, GSM7106564, GSM7106565, GSM7106566, GSM7106567, GSM7106568, GSM7106569, GSM7106570, GSM7106571, GSM7106572, GSM7135836, GSM7135837, GSM7135838, GSM7135839, GSM7135840, GSM7135841, GSM7135842, GSM7135843, GSM7135844, GSM7135845, GSM7135846, GSM7135847, GSM7135848, GSM7135849, GSM7135850, GSM7135851, GSM7135852, GSM7135853, GSM7135854, GSM7135855, GSM7135856, GSM7135857, GSM7135858, GSM7135859, GSM7135860, GSM7135861, GSM7135862, GSM7135863, GSM7135864, GSM7135865, GSM7135866, GSM7135867, GSM7135868, GSM7135869, GSM7135870, GSM7135871, GSM7135872, GSM7135873, GSM7135874, GSM7135875, GSM7488237, GSM7488238, GSM7488239, GSM7488240, GSM7488241, GSM7488242, GSM7488243, GSM7488244, GSM7488245, GSM7488246, GSM7488247, GSM7488248, GSM7488249, GSM7488250, GSM7488251, GSM7488252, GSM7488253, GSM7488254, GSM7648582, GSM7790934, GSM7790935, GSM7790936, GSM7790937, GSM7790938, GSM7790939, GSM8020169, GSM8020170, GSM8020171, GSM8020172, GSM8020173, GSM8020174, GSM8020175, GSM8020176, GSM8020177, GSM8020178, GSM8020179, GSM8020180, GSM8020181, GSM8516786, GSM8516787, GSM8516788, GSM8516789, GSM8516790, GSM8516791, GSM8516792, GSM8516793, GSM8516794, GSM8516795, GSM8516796, GSM8516797
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| Series (52)
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| GSE123662 |
Single-cell RNA sequencing of zebrafish pancreatic cells |
| GSE130800 |
Transcriptomic profiling of zebrafish livers with nAtf6 overexpression at collected at 78 and 120 hpf |
| GSE130801 |
Transcriptomic profiling of zebrafish livers at 5 dpf with nAtf6 overexpression or in response to ethanol exposures |
| GSE140636 |
Evolution of vertebrate gill covers through shifts in an ancient gnathostome Pou3f3 enhancer |
| GSE144734 |
IN SITU DIFFERENTIATION OF IRIDOPHORE CRYSTALLOTYPES UNDERLIES ZEBRAFISH STRIPING |
| GSE145298 |
CellOracle: Dissecting cell identity via network inference and in silico gene perturbation |
| GSE145497 |
The Warburg effect is necessary to promote glycosylation in the blastema during zebrafish tail regeneration |
| GSE146199 |
Characterization of Triptolide-Induced Hepatotoxicity by Imaging and Transcriptomics in a Novel Zebrafish Model [RNA-seq] |
| GSE146200 |
Characterization of Triptolide-Induced Hepatotoxicity by Imaging and Transcriptomics in a Novel Zebrafish Model [miRA-seq] |
| GSE146201 |
Characterization of Triptolide-Induced Hepatotoxicity by Imaging and Transcriptomics in a Novel Zebrafish Model |
| GSE146260 |
Small RNAs in anti-tuberculosis drug-induced liver injury |
| GSE151291 |
Transcriptomic profiling of the liver from zebrafish larvae exposed to 175 mM and 350 mM ethanol for 24 hours (collected at 120 hpf) |
| GSE151293 |
Comparing the genome-wide chromatin accessibility of uhrf1 hi272 mutants and phenotypically wildtype whole zebrafish embryos at 120 hpf using ATAC-Seq. |
| GSE154206 |
Epigenomic (RRBS) analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring after early-life exposure to permethrin 10 microg/L |
| GSE156412 |
Gene expression analysis by RNA-seq on control 5 dpf zebrafish livers |
| GSE156415 |
Transcriptomic profiling of 5 dpf zebrafish livers following 24 hours of exposure to arsenic |
| GSE156420 |
Gene expression analysis of 120 hpf zebrafish livers following 24 hour iAs exposure |
| GSE157575 |
Foxc1 establishes enhancer accessibility for craniofacial cartilage differentiation |
| GSE158099 |
Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development |
| GSE158101 |
Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development |
| GSE160710 |
RNA-Seq of 120 hpf control sibling and mutant uhrf1 hi272 zebrafish livers |
| GSE160728 |
Transcriptomic profiling of whole larvae and the liver from dnmt1 mutant zebrafish larvae compared to their phenotypically normal siblings at 120 hpf |
| GSE167587 |
Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish |
| GSE172511 |
hapln1 defines an epicardial cell subpopulation that establishes cardiogenic hotspots during heart morphogenesis and regeneration |
| GSE173792 |
Genome-wide chromatin accessibility and DNA methylation of wildtype zebrafish livers at 120 hpf |
| GSE178969 |
Single-cell profiling of cranial neural crest diversification across a vertebrate lifetime |
| GSE183002 |
Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis |
| GSE184363 |
Loss of autism-candidate CHD8 perturbs neural crest development and intestinal homeostatic balance [scRNA-seq] |
| GSE184364 |
Loss of autism-candidate CHD8 perturbs neural crest development and intestinal homeostatic balance |
| GSE192947 |
A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish |
| GSE193365 |
Zrsr2 is essential for hematopoiesis and splicing of minor introns in RNA and protein processing genes in zebrafish |
| GSE202238 |
Alx function in the developing eye |
| GSE202639 |
Embryo-scale reverse genetics at single-cell resolution |
| GSE210251 |
Single-nuclei profiling of chromatin accessibility and transcriptomes of jaw mesenchymal cells in wild-type and nr5a2 mutant zebrafish embryos |
| GSE211793 |
The Translation Initiation Factor Homolog, eif4e1c, Regulates Cardiomyocyte Metabolism and Proliferation During Heart Regeneration. |
| GSE215899 |
Hepatic processing of Z variant α-1-antitrypsin alters ERAD capacity to regulate cholesterol biosynthesis in a zebrafish model |
| GSE216646 |
hapln1a+ cells guide coronary growth during heart morphogenesis and regeneration [Dev, hapln1a+ cells] |
| GSE216647 |
hapln1a+ cells guide coronary growth during heart morphogenesis and regeneration [Reg, hapln1a+ cell] |
| GSE216648 |
hapln1a+ cells guide coronary growth during heart morphogenesis and regeneration [Dev, tcf21+ cells] |
| GSE216649 |
Heart morphogenesis and regeneration |
| GSE224197 |
scRNAseq gene expression profile of zebrafish jaw joint cells after IOM ligament transection. |
| GSE224695 |
Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin |
| GSE227735 |
Transcriptomic profiling of Tg(fabp10a:hUHRF1-EGFP)high zebrafish livers and control siblings at 5 dpf |
| GSE228751 |
Gene expression analysis in untreated adult zebrafish livers (~1 year older): wild-type TAB14 compared to as3mt-/- mutants |
| GSE228752 |
Transcritomic analysis in untreated and sodium arsenite treated (96-120 hours post fertilization; hpf) in pooled (12-15) zebrafish larval livers 5 days post fertilization (dpf): wild-type TAB5 compared to as3mt mutant larvae |
| GSE228753 |
Gene expression analysis in untreated or 1 mM iAs (6-120 hours post fertilization; hpf), pooled (10) whole larvae 5 days post fertilization (dpf): wild-type TAB14 compared to as3mt mutant larvae [whole lavae] |
| GSE228754 |
Gene expression analysis in zebrafish |
| GSE234993 |
Transcriptomic analysis of the liver from control sibling and mutant uhrf1-hi272 zebrafish larvae at 120 hpf treated with DMSO or Palbociclib (PD) |
| GSE237761 |
Neutrophils facilitate the epicardial regenerative response after zebrafish heart injury |
| GSE241971 |
Identifying hand2 downstream targets in cardiomyocyte during early cardiogenesis |
| GSE253405 |
Diencephalic and Neuropeptidergic Dysfunction in Zebrafish with Autism Risk Mutations |
| GSE277234 |
Epigenetic regulation by Polycomb Repressive Complex 1 promotes Cerebral Cavernous Malformations |
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| Supplementary data files not provided |
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