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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 13, 2005 |
| Title |
UCSF_mouse_1344_v1.0 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Mus musculus |
| Manufacturer |
UCSF Comprehesive Cancer Center |
| Manufacture protocol |
Hodgson G, Hager JH, Volik S, Hariono S, Wernick M, Moore D, Nowak N, Albertson DG, Pinkel D, Collins C, Hanahan D, Gray JW. (2001) Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas. Nat Genet, 29, 459-64.
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| Contributor(s) |
Hodgson JG, Gray JW |
| Submission date |
Jun 25, 2005 |
| Last update date |
Sep 13, 2005 |
| Contact name |
Graeme Hodgson |
| E-mail(s) |
ghodgson@cc.ucsf.edu
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| Phone |
415-476-3630
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| Fax |
415-476-8218
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| Organization name |
UCSF
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| Department |
Neurological Surgery
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| Street address |
Box0808
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
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| Samples (5) |
GSM65380, GSM65381, GSM65382, GSM65383, GSM65384 |
| Series (1) |
| GSE3012 |
Copy number aberrations in mouse breast tumors reveal loci and genes important in tumorigenic RTK signaling |
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| Data table header descriptions |
| ID |
|
| CLONE_ID |
Clone identifier - identifies a biological sequence through a standard clone identifier |
| spot id |
Spot number |
| subarrayrow |
subarray row |
| subarraycol |
subarray column |
| spotrow |
spot row |
| spotcol |
spot column |
| mm5_chr |
chromosome to which clone was mapped on NCBI build 33 (UCSC mm5, May 2004) of mouse genome assembly |
| mm5_coor1 |
chromosome coordinate (bp) to which clone was mapped on NCBI build 33 (UCSC mm5, May 2004) of mouse genome assembly |
| mm5_genome_coor1 |
cumulative genomic mapping position based on NCBI build 33 (UCSC mm5, May 2004) of mouse genome assembly |
| Flag |
identifies clones for which no reliable mapping information is available, or clones that exhibit inconsistent hybridization behavior |
| SPOT_ID |
spot identifier for spots without a CLONE_ID |
| Data table |
| ID |
CLONE_ID |
spot id |
subarrayrow |
subarraycol |
spotrow |
spotcol |
mm5_chr |
mm5_coor1 |
mm5_genome_coor1 |
Flag |
SPOT_ID |
| RP23-180K2_replicate1 |
RPCI-23-180K2 |
1 |
1 |
1 |
1 |
1 |
1 |
36647187 |
36647187 |
N |
|
| RP23-180K2_replicate2 |
RPCI-23-180K2 |
2 |
1 |
1 |
1 |
2 |
1 |
36647187 |
36647187 |
N |
|
| RP23-248G16_replicate1 |
AQ993774 |
3 |
1 |
1 |
1 |
3 |
7 |
26389416 |
1016937960 |
N |
|
| RP23-248G16_replicate2 |
AQ993774 |
4 |
1 |
1 |
1 |
4 |
7 |
26389416 |
1016937960 |
N |
|
| RP23-327H7_replicate1 |
RPCI-23-327H7 |
5 |
1 |
1 |
1 |
5 |
2 |
36211628 |
231415555 |
N |
|
| RP23-327H7_replicate2 |
RPCI-23-327H7 |
6 |
1 |
1 |
1 |
6 |
2 |
36211628 |
231415555 |
N |
|
| RP23-344O14_replicate1 |
RPCI-23-344O14 |
7 |
1 |
1 |
1 |
7 |
13 |
55575248 |
1799395082 |
N |
|
| RP23-344O14_replicate2 |
RPCI-23-344O14 |
8 |
1 |
1 |
1 |
8 |
13 |
55575248 |
1799395082 |
N |
|
| P1-5253_replicate1 |
D1MIT167 |
9 |
1 |
1 |
1 |
9 |
Flagged |
Flagged |
Flagged |
Y; unable to map on NCBI build 33 |
|
| P1-5253_replicate2 |
D1MIT167 |
10 |
1 |
1 |
1 |
10 |
Flagged |
Flagged |
Flagged |
Y; unable to map on NCBI build 33 |
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| RP23-6P7_replicate1 |
D8MIT159 |
11 |
1 |
1 |
1 |
11 |
8 |
19795879 |
1143396056 |
N |
|
| RP23-6P7_replicate2 |
D8MIT159 |
12 |
1 |
1 |
1 |
12 |
8 |
19795879 |
1143396056 |
N |
|
| RP23-24C10_replicate1 |
RPCI-23-24C10 |
13 |
1 |
1 |
1 |
13 |
9 |
99126868 |
1351415752 |
N |
|
| RP23-24C10_replicate2 |
RPCI-23-24C10 |
14 |
1 |
1 |
1 |
14 |
9 |
99126868 |
1351415752 |
N |
|
| RP23-110G12_replicate1 |
AZ276377 |
15 |
1 |
1 |
1 |
15 |
9 |
111115662 |
1363404546 |
N |
|
| RP23-110G12_replicate2 |
AZ276377 |
16 |
1 |
1 |
1 |
16 |
9 |
111115662 |
1363404546 |
N |
|
| RP23-437G15_replicate1 |
RPCI-23-437G15 |
17 |
1 |
1 |
1 |
17 |
9 |
99723664 |
1352012548 |
N |
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| RP23-437G15_replicate2 |
RPCI-23-437G15 |
18 |
1 |
1 |
1 |
18 |
9 |
99723664 |
1352012548 |
N |
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| RP23-308G1_replicate1 |
RPCI-23-308G1 |
19 |
1 |
1 |
2 |
1 |
1 |
93342718 |
93342718 |
N |
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| RP23-308G1_replicate2 |
RPCI-23-308G1 |
20 |
1 |
1 |
2 |
2 |
1 |
93342718 |
93342718 |
N |
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Total number of rows: 5184
Table truncated, full table size 386 Kbytes.
| Supplementary data files not provided |
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