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Platform GPL23817

Query DataSets for GPL23817

Status

Public on Jul 26, 2017

Title

Agilent-064728 SmartForests_Custom_WhiteSpruce_8x60K_CGH_Array G4126A [Feature Number version]

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Manufacturer

Agilent Technologies

Manufacture protocol

See manufacturer's web site at http://www.agilent.com/

Description

Genotypic custom probes filtered from 4x180K CGH array.

Arrays of this design have barcodes that begin with 16064728 or 2564728.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Jul 20, 2017

Last update date

Jul 26, 2017

Contact name

Julien Prunier

Organization name

Université Laval

Department

Forestry

Lab

MacKay and Porth

Street address

1030 av. de la medecine

City

Quebec

State/province

QC

ZIP/Postal code

G1V 0A6

Country

Canada

Relations

Alternative to

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
SPOT_ID	Spot identifier
CONTROL_TYPE	Control type
GENE_SYMBOL	Gene symbol
CLONE_ID	Clone ID

Data table
ID	COL	ROW	SPOT_ID	CONTROL_TYPE	GENE_SYMBOL	CLONE_ID
1	192	328	DarkCorner	pos
2	192	326	DarkCorner	pos
3	192	324	DarkCorner	pos
4	192	322	GT_W.spruce_EA791_Sense_contig102623_83579	FALSE	GQ04109_N20	GQ04109_N20
5	192	320	GT_W.spruce_EA791_AntiSense_joined182526_411706	FALSE	GQ0205_A13	GQ0205_A13
6	192	318	GT_W.spruce_EA791_Sense_joined115886_393656	FALSE	GQ02828_G10	GQ02828_G10
7	192	316	GT_W.spruce_EA791_AntiSense_contig111216_469047	FALSE	GQ03204_O11	GQ03204_O11
8	192	314	GT_W.spruce_EA791_AntiSense_joined32812_424844	FALSE	GQ03811_C08	GQ03811_C08
9	192	312	GT_W.spruce_EA791_Sense_contig87909_358967	FALSE	GQ03319_L19	GQ03319_L19
10	192	310	GT_W.spruce_EA791_AntiSense_contig92294_366610	FALSE	GQ03801_C11	GQ03801_C11
11	192	308	GT_W.spruce_EA791_Sense_contig33675_303939	FALSE	GQ02829_B18	GQ02829_B18
12	192	306	GT_W.spruce_EA791_AntiSense_contig90480_483783	FALSE	WS03217_K21	WS03217_K21
13	192	304	GT_W.spruce_EA791_Sense_contig07410_55075	FALSE	GQ0049_J05	GQ0049_J05
14	192	302	GT_W.spruce_EA791_Sense_joined75307_436983	FALSE	GQ02826_E13	GQ02826_E13
15	192	300	GT_W.spruce_EA791_AntiSense_contig236082_450986	FALSE	GQ02829_G18	GQ02829_G18
16	192	298	GT_W.spruce_EA791_AntiSense_contig75935_340200	FALSE	GQ01310_I16	GQ01310_I16
17	192	296	GT_W.spruce_EA791_Sense_contig184902_214723	FALSE	WS0312_H02	WS0312_H02
18	192	294	GT_W.spruce_EA791_Sense_contig28932_282735	FALSE	GQ03513_D17	GQ03513_D17
19	192	292	GT_W.spruce_EA791_Sense_contig150044_184041	FALSE	GQ0035_H14	GQ0035_H14
20	192	290	GT_W.spruce_EA791_Sense_contig201819_452315	FALSE	GQ02804_M05	GQ02804_M05

Total number of rows: 62893

Table truncated, full table size 5338 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary data files not provided

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