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Platform GPL23603 Query DataSets for GPL23603
Status Public on Jun 20, 2017
Title NimbleGen Arabidopsis thaliana expression array [2006-08-28_Arabidopsis_60mer_expr]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/
 
Description Expression design for Arabidopsis thaliana (TAIR6.0). 6 60mer probes per gene, 2 replicates. 30387 exemplar genes representing a total of 30510 transcripts/variants.
Arabidopsis thaliana Col-0 TAIR6.0
 
Submission date Jun 19, 2017
Last update date Jun 20, 2017
Contact name Amy Graham Briggs
E-mail(s) briggsa@beloit.edu
Phone 6083632349
Organization name Beloit College
Department Biology
Street address 700 College St.
City Beloit
State/province WI
ZIP/Postal code 53511
Country USA
 
Samples (27) GSM2674579, GSM2674580, GSM2674581, GSM2674582, GSM2674583, GSM2674584 
Series (1)
GSE100205 Expression analysis of Arabidopsis thaliana Col-0 and parg1 with and without PARP inhibitor (3AB, 3MB), with and without MAMP (flg22, elf18)

Data table header descriptions
ID
ORF
ACCESSION
BUILD
FEAT_TYPE
CHROMOSOME
START
STOP
DESCRIPTION
SEQ_URL
gene_name
GENE_INFO

Data table
ID ORF ACCESSION BUILD FEAT_TYPE CHROMOSOME START STOP DESCRIPTION SEQ_URL gene_name GENE_INFO
AT1G01010_BLOCK1 AT1G01010 NM_099983 Release 6 transcript chr1 3631 5899 ExemplarFor 'AT1G01010'; gene_id '839580'; transcript_id 'AT1G01010'; gene_name 'ANAC001'; alt 'T25K16.1 T25K16_1'; ANAC001; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01010 ANAC001 NM_099983|Release 6|transcript|chr1|3631|5899|ExemplarFor 'AT1G01010'; gene_id '839580'; transcript_id 'AT1G01010'; gene_name 'ANAC001'; alt 'T25K16.1|T25K16_1'; ANAC001; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01010
AT1G01010_BLOCK2 AT1G01010 NM_099983 Release 6 transcript chr1 3631 5899 ExemplarFor 'AT1G01010'; gene_id '839580'; transcript_id 'AT1G01010'; gene_name 'ANAC001'; alt 'T25K16.1 T25K16_1'; ANAC001; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01010 ANAC001 NM_099983|Release 6|transcript|chr1|3631|5899|ExemplarFor 'AT1G01010'; gene_id '839580'; transcript_id 'AT1G01010'; gene_name 'ANAC001'; alt 'T25K16.1|T25K16_1'; ANAC001; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01010
AT1G01020_BLOCK1 AT1G01020 NM_099984 Release 6 transcript chr1 6790 8737 ExemplarFor 'AT1G01020'; gene_id '839569'; transcript_id 'AT1G01020'; gene_name 'ARV1'; alt 'T25K16.2 T25K16_2'; ARV1|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01020 ARV1 NM_099984|Release 6|transcript|chr1|6790|8737|ExemplarFor 'AT1G01020'; gene_id '839569'; transcript_id 'AT1G01020'; gene_name 'ARV1'; alt 'T25K16.2|T25K16_2'; ARV1|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01020
AT1G01020_BLOCK2 AT1G01020 NM_099984 Release 6 transcript chr1 6790 8737 ExemplarFor 'AT1G01020'; gene_id '839569'; transcript_id 'AT1G01020'; gene_name 'ARV1'; alt 'T25K16.2 T25K16_2'; ARV1|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01020 ARV1 NM_099984|Release 6|transcript|chr1|6790|8737|ExemplarFor 'AT1G01020'; gene_id '839569'; transcript_id 'AT1G01020'; gene_name 'ARV1'; alt 'T25K16.2|T25K16_2'; ARV1|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01020
AT1G01030_BLOCK1 AT1G01030 NM_099985 Release 6 transcript chr1 11649 13611 ExemplarFor 'AT1G01030'; gene_id '839321'; transcript_id 'AT1G01030'; gene_name 'AT1G01030'; alt 'T25K16.3 T25K16_3'; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01030 AT1G01030 NM_099985|Release 6|transcript|chr1|11649|13611|ExemplarFor 'AT1G01030'; gene_id '839321'; transcript_id 'AT1G01030'; gene_name 'AT1G01030'; alt 'T25K16.3|T25K16_3'; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01030
AT1G01030_BLOCK2 AT1G01030 NM_099985 Release 6 transcript chr1 11649 13611 ExemplarFor 'AT1G01030'; gene_id '839321'; transcript_id 'AT1G01030'; gene_name 'AT1G01030'; alt 'T25K16.3 T25K16_3'; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01030 AT1G01030 NM_099985|Release 6|transcript|chr1|11649|13611|ExemplarFor 'AT1G01030'; gene_id '839321'; transcript_id 'AT1G01030'; gene_name 'AT1G01030'; alt 'T25K16.3|T25K16_3'; transcription factor|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01030
AT1G01040_BLOCK1 AT1G01040 NM_099986 Release 6 transcript chr1 23146 31164 ExemplarFor 'AT1G01040'; gene_id '839574'; transcript_id 'AT1G01040'; gene_name 'DCL1'; alt 'ABNORMAL SUSPENSOR 1 ASU1|CAF|CARPEL FACTORY|DICER-LIKE1|EMB60|EMB76|EMBRYO DEFECTIVE 60|EMBRYO DEFECTIVE 76|SHORT INTEGUMENTS 1|SIN1|SUS1|SUSPENSOR 1|T25K16.4|T25K16_4'; DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01040 DCL1 NM_099986|Release 6|transcript|chr1|23146|31164|ExemplarFor 'AT1G01040'; gene_id '839574'; transcript_id 'AT1G01040'; gene_name 'DCL1'; alt 'ABNORMAL SUSPENSOR 1|ASU1|CAF|CARPEL FACTORY|DICER-LIKE1|EMB60|EMB76|EMBRYO DEFECTIVE 60|EMBRYO DEFECTIVE 76|SHORT INTEGUMENTS 1|SIN1|SUS1|SUSPENSOR 1|T25K16.4|T25K16_4'; DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01040
AT1G01040_BLOCK2 AT1G01040 NM_099986 Release 6 transcript chr1 23146 31164 ExemplarFor 'AT1G01040'; gene_id '839574'; transcript_id 'AT1G01040'; gene_name 'DCL1'; alt 'ABNORMAL SUSPENSOR 1 ASU1|CAF|CARPEL FACTORY|DICER-LIKE1|EMB60|EMB76|EMBRYO DEFECTIVE 60|EMBRYO DEFECTIVE 76|SHORT INTEGUMENTS 1|SIN1|SUS1|SUSPENSOR 1|T25K16.4|T25K16_4'; DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01040 DCL1 NM_099986|Release 6|transcript|chr1|23146|31164|ExemplarFor 'AT1G01040'; gene_id '839574'; transcript_id 'AT1G01040'; gene_name 'DCL1'; alt 'ABNORMAL SUSPENSOR 1|ASU1|CAF|CARPEL FACTORY|DICER-LIKE1|EMB60|EMB76|EMBRYO DEFECTIVE 60|EMBRYO DEFECTIVE 76|SHORT INTEGUMENTS 1|SIN1|SUS1|SUSPENSOR 1|T25K16.4|T25K16_4'; DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01040
AT1G01050_BLOCK1 AT1G01050 NM_099987 Release 6 transcript chr1 31181 33148 ExemplarFor 'AT1G01050'; gene_id '839579'; transcript_id 'AT1G01050'; gene_name 'AT1G01050'; alt 'T25K16.5 T25K16_5'; inorganic diphosphatase/ magnesium ion binding / pyrophosphatase|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01050 AT1G01050 NM_099987|Release 6|transcript|chr1|31181|33148|ExemplarFor 'AT1G01050'; gene_id '839579'; transcript_id 'AT1G01050'; gene_name 'AT1G01050'; alt 'T25K16.5|T25K16_5'; inorganic diphosphatase/ magnesium ion binding / pyrophosphatase|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01050
AT1G01050_BLOCK2 AT1G01050 NM_099987 Release 6 transcript chr1 31181 33148 ExemplarFor 'AT1G01050'; gene_id '839579'; transcript_id 'AT1G01050'; gene_name 'AT1G01050'; alt 'T25K16.5 T25K16_5'; inorganic diphosphatase/ magnesium ion binding / pyrophosphatase|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01050 AT1G01050 NM_099987|Release 6|transcript|chr1|31181|33148|ExemplarFor 'AT1G01050'; gene_id '839579'; transcript_id 'AT1G01050'; gene_name 'AT1G01050'; alt 'T25K16.5|T25K16_5'; inorganic diphosphatase/ magnesium ion binding / pyrophosphatase|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01050
AT1G01060_BLOCK1 AT1G01060 NM_099988 Release 6 transcript chr1 33379 37840 ExemplarFor 'AT1G01060'; gene_id '839341'; transcript_id 'AT1G01060'; gene_name 'LHY'; alt 'LATE ELONGATED HYPOCOTYL LHY1|T25K16.6|T25K16_6'; LHY (LATE ELONGATED HYPOCOTYL); DNA binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01060 LHY NM_099988|Release 6|transcript|chr1|33379|37840|ExemplarFor 'AT1G01060'; gene_id '839341'; transcript_id 'AT1G01060'; gene_name 'LHY'; alt 'LATE ELONGATED HYPOCOTYL|LHY1|T25K16.6|T25K16_6'; LHY (LATE ELONGATED HYPOCOTYL); DNA binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01060
AT1G01060_BLOCK2 AT1G01060 NM_099988 Release 6 transcript chr1 33379 37840 ExemplarFor 'AT1G01060'; gene_id '839341'; transcript_id 'AT1G01060'; gene_name 'LHY'; alt 'LATE ELONGATED HYPOCOTYL LHY1|T25K16.6|T25K16_6'; LHY (LATE ELONGATED HYPOCOTYL); DNA binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01060 LHY NM_099988|Release 6|transcript|chr1|33379|37840|ExemplarFor 'AT1G01060'; gene_id '839341'; transcript_id 'AT1G01060'; gene_name 'LHY'; alt 'LATE ELONGATED HYPOCOTYL|LHY1|T25K16.6|T25K16_6'; LHY (LATE ELONGATED HYPOCOTYL); DNA binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01060
AT1G01070_BLOCK1 AT1G01070 NM_099989 Release 6 transcript chr1 38753 40944 ExemplarFor 'AT1G01070'; gene_id '839550'; transcript_id 'AT1G01070'; gene_name 'AT1G01070'; alt 'T25K16.7 T25K16_7'; unknown protein|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01070 AT1G01070 NM_099989|Release 6|transcript|chr1|38753|40944|ExemplarFor 'AT1G01070'; gene_id '839550'; transcript_id 'AT1G01070'; gene_name 'AT1G01070'; alt 'T25K16.7|T25K16_7'; unknown protein|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01070
AT1G01070_BLOCK2 AT1G01070 NM_099989 Release 6 transcript chr1 38753 40944 ExemplarFor 'AT1G01070'; gene_id '839550'; transcript_id 'AT1G01070'; gene_name 'AT1G01070'; alt 'T25K16.7 T25K16_7'; unknown protein|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01070 AT1G01070 NM_099989|Release 6|transcript|chr1|38753|40944|ExemplarFor 'AT1G01070'; gene_id '839550'; transcript_id 'AT1G01070'; gene_name 'AT1G01070'; alt 'T25K16.7|T25K16_7'; unknown protein|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01070
AT1G01080_BLOCK1 AT1G01080 NM_099990 Release 6 transcript chr1 45296 47019 ExemplarFor 'AT1G01080'; gene_id '839463'; transcript_id 'AT1G01080'; gene_name 'AT1G01080'; alt 'T25K16.19 T25K16_19'; RNA binding / nucleic acid binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01080 AT1G01080 NM_099990|Release 6|transcript|chr1|45296|47019|ExemplarFor 'AT1G01080'; gene_id '839463'; transcript_id 'AT1G01080'; gene_name 'AT1G01080'; alt 'T25K16.19|T25K16_19'; RNA binding / nucleic acid binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01080
AT1G01080_BLOCK2 AT1G01080 NM_099990 Release 6 transcript chr1 45296 47019 ExemplarFor 'AT1G01080'; gene_id '839463'; transcript_id 'AT1G01080'; gene_name 'AT1G01080'; alt 'T25K16.19 T25K16_19'; RNA binding / nucleic acid binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01080 AT1G01080 NM_099990|Release 6|transcript|chr1|45296|47019|ExemplarFor 'AT1G01080'; gene_id '839463'; transcript_id 'AT1G01080'; gene_name 'AT1G01080'; alt 'T25K16.19|T25K16_19'; RNA binding / nucleic acid binding|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01080
AT1G01090_BLOCK1 AT1G01090 NM_099991 Release 6 transcript chr1 47485 49279 ExemplarFor 'AT1G01090'; gene_id '839429'; transcript_id 'AT1G01090'; gene_name 'PDH-E1 ALPHA'; alt 'PYRUVATE DEHYDROGENASE E1 ALPHA "T25K16.8|T25K16_8'; PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring)|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01090" PDH-E1 ALPHA "NM_099991|Release 6|transcript|chr1|47485|49279|ExemplarFor 'AT1G01090'; gene_id '839429'; transcript_id 'AT1G01090'; gene_name 'PDH-E1 ALPHA'; alt 'PYRUVATE DEHYDROGENASE E1 ALPHA|T25K16.8|T25K16_8'; PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring)|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01090"
AT1G01090_BLOCK2 AT1G01090 NM_099991 Release 6 transcript chr1 47485 49279 ExemplarFor 'AT1G01090'; gene_id '839429'; transcript_id 'AT1G01090'; gene_name 'PDH-E1 ALPHA'; alt 'PYRUVATE DEHYDROGENASE E1 ALPHA "T25K16.8|T25K16_8'; PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring)|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01090" PDH-E1 ALPHA "NM_099991|Release 6|transcript|chr1|47485|49279|ExemplarFor 'AT1G01090'; gene_id '839429'; transcript_id 'AT1G01090'; gene_name 'PDH-E1 ALPHA'; alt 'PYRUVATE DEHYDROGENASE E1 ALPHA|T25K16.8|T25K16_8'; PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring)|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01090"
AT1G01100_BLOCK1 AT1G01100 NM_099992 Release 6 transcript chr1 50091 51182 ExemplarFor 'AT1G01100'; gene_id '839410'; transcript_id 'AT1G01100'; gene_name 'AT1G01100'; alt 'T25K16.9 T25K16_9'; structural constituent of ribosome|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01100 AT1G01100 NM_099992|Release 6|transcript|chr1|50091|51182|ExemplarFor 'AT1G01100'; gene_id '839410'; transcript_id 'AT1G01100'; gene_name 'AT1G01100'; alt 'T25K16.9|T25K16_9'; structural constituent of ribosome|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01100
AT1G01100_BLOCK2 AT1G01100 NM_099992 Release 6 transcript chr1 50091 51182 ExemplarFor 'AT1G01100'; gene_id '839410'; transcript_id 'AT1G01100'; gene_name 'AT1G01100'; alt 'T25K16.9 T25K16_9'; structural constituent of ribosome|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01100 AT1G01100 NM_099992|Release 6|transcript|chr1|50091|51182|ExemplarFor 'AT1G01100'; gene_id '839410'; transcript_id 'AT1G01100'; gene_name 'AT1G01100'; alt 'T25K16.9|T25K16_9'; structural constituent of ribosome|http://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01100

Total number of rows: 60770

Table truncated, full table size 35829 Kbytes.




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Supplementary file Size Download File type/resource
GPL23603_2006-08-28_Arabidopsis_60mer_expr.ndf.gz 22.6 Mb (ftp)(http) NDF
GPL23603_2006-08-28_Arabidopsis_60mer_expr.ngd.gz 1.4 Mb (ftp)(http) NGD

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