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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 31, 2017 |
| Title |
Illumina HiSeq 4000 (Oryza sativa) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Oryza sativa |
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| Submission date |
Jan 31, 2017 |
| Last update date |
Jan 31, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (656)
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GSM2472856, GSM2472857, GSM2472858, GSM2472859, GSM2472860, GSM2472861
GSM2472862, GSM2472863, GSM2472864, GSM2472865, GSM2472866, GSM2472867, GSM2532795, GSM2532796, GSM2883118, GSM2883119, GSM2883120, GSM2883121, GSM2883122, GSM2883123, GSM2883124, GSM2883125, GSM2883126, GSM2883127, GSM2883128, GSM2883129, GSM2883130, GSM2883131, GSM2883132, GSM2883133, GSM2883134, GSM2883135, GSM3063027, GSM3063028, GSM3063029, GSM3063030, GSM3109033, GSM3109034, GSM3109035, GSM3109036, GSM3132599, GSM3132600, GSM3132601, GSM3132602, GSM3132603, GSM3132604, GSM3132605, GSM3132606, GSM3164182, GSM3164183, GSM3164184, GSM3164185, GSM3164186, GSM3164187, GSM3214032, GSM3214033, GSM3214034, GSM3214035, GSM3214036, GSM3214037, GSM3537568, GSM3537569, GSM3537570, GSM3537571, GSM3537572, GSM3537573, GSM3537574, GSM3537575, GSM3537576, GSM3537577, GSM3537578, GSM3537579, GSM3537580, GSM3537581, GSM3613362, GSM3613363, GSM3613364, GSM3613365, GSM3758198, GSM3758199, GSM3758200, GSM3758201, GSM3758202, GSM3758203, GSM3758204, GSM3758205, GSM3758206, GSM3758207, GSM3758208, GSM3758209, GSM3758210, GSM3758211, GSM3758212, GSM3758213, GSM3758214, GSM3758215, GSM4012757, GSM4225283, GSM4225284, GSM4225285, GSM4225286, GSM4225287, GSM4225288, GSM4338181, GSM4338182, GSM4338183, GSM4338184, GSM4338185, GSM4338186, GSM4338187, GSM4338188, GSM4338189, GSM4338190, GSM4338191, GSM4338192, GSM4338193, GSM4338194, GSM4338195, GSM4338196, GSM4367753, GSM4367754, GSM4367755, GSM4367756, GSM4367757, GSM4367758, GSM4367759, GSM4367760, GSM4367761, GSM4367762, GSM4367763, GSM4367764, GSM4547734, GSM4547735, GSM4547736, GSM4547737, GSM4547738, GSM4547739, GSM4547740, GSM4547741, GSM4547742, GSM4547743, GSM4547744, GSM4547745, GSM4623386, GSM4623387, GSM4623388, GSM4623389, GSM4623390, GSM4623391, GSM4623392, GSM4623393, GSM4623394, GSM4623395, GSM4623396, GSM4623397, GSM4623398, GSM4623399, GSM4623400, GSM4623401, GSM4623402, GSM4623403, GSM4623404, GSM4623405, GSM4623406, GSM4623407, GSM4623408, GSM4623409, GSM4623410, GSM4623411, GSM4623412, GSM4623413, GSM4623414, GSM4623415, GSM4623416, GSM4623417, GSM4623418, GSM4623419, GSM4623420, GSM4623421, GSM4623422, GSM4623423, GSM4623424, GSM4716025, GSM4716026, GSM4716027, GSM4716028, GSM4716029, GSM4716030, GSM4716031, GSM4716032, GSM4716033, GSM4716034, GSM4716035, GSM4716036, GSM4716037, GSM4716038, GSM4716039, GSM4716040, GSM4716041, GSM4716042, GSM4716043, GSM4716044, GSM4824429, GSM4824430, GSM4824431, GSM4824432, GSM4824433, GSM4824434, GSM4824435, GSM4824436, GSM4824437, GSM4824438, GSM4824439, GSM4824440, GSM4824441, GSM4824442, GSM4824443, GSM4824444, GSM4824445, GSM4824446, GSM4824447, GSM4824448, GSM4885513, GSM4885514, GSM4885515, GSM4885516, GSM4885517, GSM4885518, GSM4949610, GSM4949611, GSM5049383, GSM5049384, GSM5049385, GSM5049386, GSM5049387, GSM5049388, GSM5049389, GSM5049390, GSM5049391, GSM5049392, GSM5049393, GSM5049394, GSM5049395, GSM5049396, GSM5049397, GSM5049398, GSM5049399, GSM5049400, GSM5049401, GSM5049402, GSM5049403, GSM5049404, GSM5049405, GSM5049406, GSM5049407, GSM5049408, GSM5049409, GSM5049410, GSM5049411, GSM5049412, GSM5049413, GSM5049414, GSM5049415, GSM5049416, GSM5049417, GSM5049418, GSM5114351, GSM5114352, GSM5114353, GSM5114354, GSM5114355, GSM5114356, GSM5114357, GSM5114358, GSM5114359, GSM5114360, GSM5114361, GSM5114362, GSM5227681, GSM5227682, GSM5227683, GSM5227684, GSM5227685, GSM5227686, GSM5227687, GSM5227688, GSM5227689, GSM5227690, GSM5227691, GSM5227692, GSM5227693, GSM5227694, GSM5227695, GSM5227696, GSM5227697, GSM5227698, GSM5227699, GSM5227700, GSM5227701, GSM5227702, GSM5227703, GSM5227704, GSM5227705, GSM5227706, GSM5227707, GSM5227708, GSM5227709, GSM5227710, GSM5227711, GSM5227712, GSM5227713, GSM5227714, GSM5227715, GSM5227716, GSM5352131, GSM5352132, GSM5352133, GSM5352134, GSM5352135, GSM5352136, GSM5352137, GSM5352138, GSM5352139, GSM5352140, GSM5352141, GSM5352142, GSM5352143, GSM5352144, GSM5352145, GSM5352146, GSM5352147, GSM5352148, GSM5352149, GSM5352150, GSM5352151, GSM5352152, GSM5352153, GSM5352154, GSM5352155, GSM5352156, GSM5352157, GSM5352158, GSM5352159, GSM5352160, GSM5352161, GSM5352162, GSM5352163, GSM5352164, GSM5352165, GSM5352166, GSM5366639, GSM5366640, GSM5494862, GSM5494863, GSM5494864, GSM5494865, GSM5494866, GSM5494867, GSM5494868, GSM5494869, GSM5494870, GSM5494871, GSM5494872, GSM5494873, GSM5494874, GSM5494875, GSM5494876, GSM5494877, GSM5494878, GSM5494879, GSM5494880, GSM5494881, GSM5494882, GSM5494883, GSM5494884, GSM5494885, GSM5494886, GSM5494887, GSM5494888, GSM5494889, GSM5494890, GSM5494891, GSM5494892, GSM5494893, GSM5494894, GSM5494895, GSM5494896, GSM5494897, GSM5494898, GSM5494899, GSM5494900, GSM5494901, GSM5494902, GSM5494903, GSM5494904, GSM5494905, GSM5494906, GSM5494907, GSM5494908, GSM5494909, GSM5570896, GSM5570897, GSM5570898, GSM5570899, GSM5570900, GSM5570901, GSM5570964, GSM5570965, GSM5570966, GSM5570967, GSM5591967, GSM5591968, GSM5591969, GSM5591970, GSM5591971, GSM5591972, GSM5591973, GSM5591974, GSM5591975, GSM5591976, GSM5591977, GSM5591978, GSM5591979, GSM5591980, GSM5591981, GSM5591982, GSM5591983, GSM5591984, GSM5591985, GSM5591986, GSM5591987, GSM5591988, GSM5591989, GSM5591990, GSM5591991, GSM5591992, GSM5591993, GSM5591994, GSM5591995, GSM5591996, GSM5591997, GSM5591998, GSM5591999, GSM5592000, GSM5592001, GSM5592002, GSM5658100, GSM5658101, GSM5658102, GSM5658103, GSM5658104, GSM5658105, GSM5658106, GSM5658107, GSM5658108, GSM5658109, GSM5658110, GSM5658111, GSM5658112, GSM5658113, GSM5658114, GSM5658115, GSM5658116, GSM5658117, GSM5658118, GSM5658119, GSM5658120, GSM5658121, GSM5658122, GSM5658123, GSM5658124, GSM5658125, GSM5658126, GSM5658127, GSM5658128, GSM5658129, GSM5658130, GSM5658131, GSM5658132, GSM5658133, GSM5658134, GSM5658135, GSM5658136, GSM5658137, GSM5658138, GSM5658139, GSM5658140, GSM5658141, GSM5658142, GSM5658143, GSM5658144, GSM5658145, GSM5658146, GSM5658147, GSM5658148, GSM5658149, GSM5658150, GSM5658151, GSM5658152, GSM5658153...
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You can also download a list of all accessions here
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| Series (51)
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| GSE94319 |
A genome-wide survey of DNA methylation in OsNAR2.1 transgenic plants |
| GSE96073 |
Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.) |
| GSE107903 |
Oryza sativa Argonaute 18 is a regulator of male sterility (RNA-Seq) |
| GSE112257 |
Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice [sRNA-Seq] |
| GSE112258 |
Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice [BS-Seq] |
| GSE112259 |
Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice |
| GSE113554 |
Rice stripe virus-derived siRNAs play different regulatory roles in host plant and vector insect [sRNA-Seq] |
| GSE113555 |
Rice stripe virus-derived siRNAs play different regulatory roles in host plant and vector insect |
| GSE114090 |
ATAC-seq profiling of open chromatin with global epigenetic and transcriptional trends in two-line hybrid rice |
| GSE115053 |
RNA-seq datasets of OsRDR3 transgenic plants. |
| GSE116214 |
An integrated analysis of small RNAs, degradome and transcriptome in rice seedling exposure to cadmium stress [transcriptome] |
| GSE116275 |
An integrated analysis of small RNAs, degradome and transcriptome in rice seedling exposure to cadmium stress |
| GSE124608 |
Quantification of tRNA-derived fragments in Arabidopsis and rice |
| GSE126791 |
DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm |
| GSE130980 |
Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery (mRNA-seq) |
| GSE131004 |
Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery |
| GSE135498 |
Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA |
| GSE135549 |
RNA demethylation induces increased crop biomass and productivity in the field |
| GSE142323 |
Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing |
| GSE145868 |
Comparative transcriptomics and co-expression networks reveal tissue- and genotype-specific responses to reproductive-stage drought stress in rice (Oryza sativa L.) [flag-leaf] |
| GSE145870 |
Comparative transcriptomics and co-expression networks reveal tissue- and genotype-specific responses to reproductive-stage drought stress in rice (Oryza sativa L.) |
| GSE146174 |
Coordination of Circadian Clock in Chilling Stress Response of Rice (Oryza sativa L.) |
| GSE150378 |
Alterations of rice (Oryza sativa L.) DNA methylation patterns associated with gene expression in response to Rice black-streaked dwarf virus |
| GSE152572 |
Plant breeding involving genetic engineering does not result in unacceptable unintended effects in rice relative to conventional cross-breeding |
| GSE155930 |
Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [mRNA] |
| GSE155932 |
Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density |
| GSE159259 |
Transcriptomic and metabolomic responses of rice plants to Cnaphalocrocis medinalis caterpillar infestation |
| GSE160884 |
Plant DNA methylation sensitive to parent seed N content and mediated the influence of external nitrogen on OsNAR2.1 overexpression rice growth |
| GSE162312 |
The transcriptomic landscapes of rice cultivars with diverse root system architectures grown in upland field conditions [DAP-seq] |
| GSE162313 |
The transcriptomic landscapes of rice cultivars with diverse root system architectures grown in upland field conditions |
| GSE167872 |
Cooperative herbivory between two important pests of rice |
| GSE171578 |
iPOTs: Internet of Things-based pot system controlling optional treatment of soil water condition for plant phenotyping under drought stress |
| GSE175967 |
Unique transcriptome and gene expression analysis of flag leaves of a super-hybrid rice WFYT025 |
| GSE176497 |
RNA-Seq and Electrical Penetration Graph Revealed the Role of Grh1-Mediated Activation of Defense Mechanisms towards Green Rice Leafhopper (Nephotettix cincticeps Uhler) Resistance in Rice (Oryza sativa L.) |
| GSE181336 |
Transcriptomic responses to submergence in elongating and non-elongating leaves of rice with and without SUB1A |
| GSE183789 |
PANDA epigenetically regulates the trade-off between panicle number and grain size in rice [ChIP-Seq] |
| GSE183794 |
PANDA epigenetically regulates the trade-off between panicle number and grain size in rice [RNA-Seq] |
| GSE183796 |
PANDA epigenetically regulates the trade-off between panicle number and grain size in rice |
| GSE184529 |
Multi-Omics Approaches Explain the Growth-Promoting Effect of the Apocarotenoid Growth Regulator Zaxinone in Rice |
| GSE186372 |
Transcritome provides insights into predicting the heterosis level |
| GSE197133 |
RNA Seq analysis of tolerant (BPT5204) and susceptible (TN1) variety of Oryza sativa cv. Indica under drought, pathogen, and combined stress |
| GSE198286 |
Transcriptome-wide profiling of RNA N4-cytidine acetylation in Arabidopsis thaliana and Oryza sativa |
| GSE199139 |
Integrated transcriptomics and miRNAomics provide insights into the regulatory networks associated with coleoptile senescence in rice |
| GSE200863 |
Transcriptome analysis provides insights into the mechanism of salt tolerance in rice colonized by arbuscular mycorrhizal fungi |
| GSE201399 |
Transcriptome profiling of rice plants in response to 2-Nitroaniline |
| GSE206706 |
Jasmonate signaling controls negative and positive effectors of salt stress tolerance in rice |
| GSE209990 |
Epigenomic Features and Potential Functions of K+ and Na+ Favorable DNA G-Quadruplexes in Rice |
| GSE221837 |
Transcriptome analysis of rice max1-1400 mutant |
| GSE237294 |
Epigenomic features and potential functions of PEG and PDS favorable DNA G-quadruplexes in rice |
| GSE241093 |
Fine mapping of a novel locus qIGL1 (INCREASE GRAIN LENGTH 1), a major QTL for modulating grain length in rice |
| GSE266082 |
Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations |
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| Supplementary data files not provided |
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