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Platform GPL22364 Query DataSets for GPL22364
Status Public on Sep 01, 2016
Title nCounter Mouse PanCancer Immune Profiling Panel
Technology type other
Distribution commercial
Organism Mus musculus
Manufacturer NanoString
Manufacture protocol See manufacturer's website (http://www.nanostring.com)
http://www.nanostring.com/media/pdf/MAN_nCounter_Gene_Expression_Assay.pdf
 
 
Submission date Aug 23, 2016
Last update date Sep 01, 2016
Contact name Michael Gale, Jr
E-mail(s) uw_galelab_geo@uw.edu
Organization name University of Washington
Department Immunology
Street address 750 Republican St. E360, Box 358059
City Seattle
State/province Washington
ZIP/Postal code 98109
Country USA
 
Samples (442) GSM2290358, GSM2290359, GSM2290360, GSM2290361, GSM2290362, GSM2290363 
Series (26)
GSE85999 Determining Neurovirulance host expression patterns in diverse genetic backgrounds [brain]
GSE86000 Identifying protective host signatures to West Nile Virus infection in the collaborative cross [spleen]
GSE93192 Combination therapy of NHS-IL12 and avelumab enhances antitumor efficacy in preclinical cancer models

Data table header descriptions
ID Official Symbol
GB_ACC
Alias Alias/Previous Symbol
GO Annotation
SEQUENCE Target Sequence
Official Full Name Official Full Name
Code_Class Class of target (Endogenous, Housekeeping, Negative, Positive)

Data table
ID GB_ACC Alias GO Annotation SEQUENCE Official Full Name Code_Class
A2m NM_175628.3 A2mp extracellular region,extracellular space,female pregnancy,negative regulation of complement activation, lectin pathway,serine-type endopeptidase inhibitor activity,endopeptidase inhibitor activity,growth factor binding,enzyme binding,interleukin-8 binding,interleukin-1 binding,tumor necrosis factor binding,negative regulation of endopeptidase activity,negative regulation of endopeptidase activity,stem cell differentiation,negative regulation of peptidase activity,peptidase inhibitor activity AGAGGACATGTATGGCTTCCTAAAGGATATGGGCTTAAAGGTATTCACCAACTTGAACATCCGTAAACCCAAAGTCTGTGAACGCCTTGGAGTCAATAAA alpha-2-macroglobulin Endogenous
Abca1 NM_013454.3 ABC-1|Abc1 nucleotide binding,ATP binding,intracellular,membrane fraction,lysosome organization,G-protein coupled receptor signaling pathway,syntaxin binding,endocytic vesicle,nucleoside-triphosphatase activity,ATPase activity,integral to membrane,lipoprotein metabolic process,membrane,protein lipidation,transport,anion transmembrane transporter activity,phospholipid transport,phospholipid transporter activity,phospholipid transporter activity,cholesterol transporter activity,cholesterol transporter activity,anion transport,metabolic process,Golgi apparatus,integral to plasma membrane,integral to plasma membrane,lipoprotein biosynthetic process,lipoprotein biosynthetic process,lipoprotein biosynthetic process,plasma membrane,protein binding,protein binding,plasma membrane,endosome transport,positive regulation of cAMP biosynthetic process,small GTPase binding,intracellular cholesterol transport,Cdc42 protein signal transduction,apolipoprotein binding,apolipoprotein A-I binding,apolipoprotein A-I receptor activity,choles CTCCTTGTCATCTCTAGCCAGGATATTCAGCATCCTCTCCCAGAGCAAAAAGCGACTCCACATAGAAGACTACTCTGTCTCTCAGACAACACTTGACCAA ATP-binding cassette, sub-family A (ABC1), member 1 Endogenous
Abcb1a NM_011076.1 Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3 transmembrane transport,stem cell proliferation,negative regulation of cell death,drug transmembrane transport,apical plasma membrane,G2/M transition of mitotic cell cycle,ATPase activity, coupled to transmembrane movement of substances,integral to membrane,Golgi membrane,cell surface,xenobiotic-transporting ATPase activity,nucleoside-triphosphatase activity,ATPase activity,transport,hydrolase activity,ATP binding,nucleotide binding,membrane,plasma membrane,ATP catabolic process,drug transport,intercellular canaliculus,ATPase activity, coupled AAGGGGCTACAGGGTCTAGGCTTGCTGTGATTTTCCAGAACATAGCAAATCTTGGGACAGGAATCATCATATCCCTAATCTATGGCTGGCAACTAACACT ATP-binding cassette, sub-family B (MDR/TAP), member 1A Endogenous
Abcg1 NM_009593.1 AW413978|Abc8|White ATP binding,phospholipid transporter activity,intracellular,Golgi apparatus,transport,lipid transport,integral to membrane,membrane,nucleotide binding,plasma membrane,external side of plasma membrane,external side of plasma membrane,nucleoside-triphosphatase activity,ATPase activity,cholesterol metabolic process,response to organic substance,phospholipid transport,cholesterol transporter activity,toxin transporter activity,cholesterol efflux,cholesterol efflux,intracellular cholesterol transport,phospholipid efflux,response to lipid,sterol-transporting ATPase activity,cholesterol homeostasis,protein homodimerization activity,amyloid precursor protein catabolic process,ADP binding,protein heterodimerization activity,response to high density lipoprotein particle stimulus,reverse cholesterol transport,positive regulation of cholesterol biosynthetic process,regulation of transcription, DNA-dependent,endosome,cholesterol transport,recycling endosome,phospholipid homeostasis,ATP catabolic process,ATP catabolic proc GCGGCCGTGAACATCGAATTCAAGGACCTTTCCTACTCTGTACCCGAGGGGCCCTGGTGGAAGAAGAAAGGATACAAGACCCTTTTGAAAGGGATCTCTG ATP-binding cassette, sub-family G (WHITE), member 1 Endogenous
Abl1 NM_009594.4 AI325092|Abl|E430008G22Rik|c-Abl proline-rich region binding,negative regulation of protein serine/threonine kinase activity,regulation of response to DNA damage stimulus,transferase activity, transferring phosphorus-containing groups,non-membrane spanning protein tyrosine kinase activity,magnesium ion binding,magnesium ion binding,DNA damage induced protein phosphorylation,protein tyrosine kinase activity,protein tyrosine kinase activity,protein tyrosine kinase activity,actin cytoskeleton organization,ATP binding,ATP binding,cytoskeleton,endocytosis,nucleus,nucleus,protein C-terminus binding,SH3 domain binding,protein phosphorylation,signal transduction in response to DNA damage,peptidyl-tyrosine phosphorylation,peptidyl-tyrosine phosphorylation,peptidyl-tyrosine phosphorylation,cytosol,nucleolus,regulation of cell cycle,protein domain specific binding,DNA repair,phosphorylation,autophagy,apoptotic process,manganese ion binding,manganese ion binding,protein binding,kinase activity,cytoplasm,positive regulation of apoptotic process,positive ATTGCTCTGGGAGATTGCTACCTATGGCATGTCACCTTACCCGGGAATTGACCTGTCTCAGGTTTATGAGCTGCTGGAAAAAGACTACCGCATGGAGCGC c-abl oncogene 1, non-receptor tyrosine kinase Endogenous
Ada NM_007398.3 - cytosol,response to hypoxia,response to hypoxia,extracellular space,hydrolase activity,lysosome,nucleotide metabolic process,cell adhesion,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,deaminase activity,adenosine deaminase activity,plasma membrane,membrane,cell junction,cytoplasm,cytoplasm,cytoplasm,cytoplasm,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,adenosine deaminase activity,zinc ion binding,zinc ion binding,purine ribonucleoside monophosphate biosynthetic process,positive regulation of smooth muscle contraction,cell surface,external side of plasma membrane,external side of plasma membrane,adenosine catabolic process,adenosine catabolic process,T cell activation,inosine biosynthetic process,inosine biosynthetic process,inosine biosynthetic process,i GACATGGTTATCACACCATCGAGGATGAAGCTCTCTACAACAGACTACTGAAAGAAAACATGCACTTTGAGGTCTGCCCCTGGTCCAGCTACCTCACAGG adenosine deaminase Endogenous
Adora2a NM_009630.2 A2AAR|A2aR|AA2AR response to caffeine,type 5 metabotropic glutamate receptor binding,synaptic transmission, glutamatergic,presynaptic membrane,neuronal cell body,negative regulation of vascular permeability,negative regulation of cysteine-type endopeptidase activity involved in apoptotic process,response to alkaloid,negative regulation of neuron apoptosis,protein heterodimerization activity,astrocyte activation,regulation of synaptic plasticity,presynaptic active zone,positive regulation of protein secretion,nonmuscle alpha-actinin binding,response to amphetamine,regulation of mitochondrial membrane potential,membrane depolarization,positive regulation of cAMP biosynthetic process,induction of apoptosis in response to chemical stimulus,negative regulation of inflammatory response,synaptic transmission, dopaminergic,eating behavior,eating behavior,adenosine receptor signaling pathway,adenosine receptor signaling pathway,adenosine receptor signaling pathway,G-protein coupled receptor activity,integral to membrane,receptor activ ACTATGAAAGGCAGGGTGCCAGAGTGTGGGCTCACGTCTCAGGATTGAGTTTAGAGACATCAAGTCATGGACCCGAGCTGGATAGTTCAGAGCTGCCCTG adenosine A2a receptor Endogenous
Aicda NM_009645.2 Aid|Arp2 hydrolase activity,metal ion binding,mRNA processing,zinc ion binding,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines,catalytic activity,cytidine deaminase activity,cytidine deaminase activity,cytidine deaminase activity,cytoplasm,cytidine deamination,cytidine deamination,isotype switching,nucleus,somatic diversification of immunoglobulins,protein binding,DNA demethylation,negative regulation of methylation-dependent chromatin silencing AATCGTGAAAGAACTTTCAAAGCCTGGGAAGGGCTACATGAAAATTCTGTCCGGCTAACCAGACAACTTCGGCGCATCCTTTTGCCCTTGTACGAAGTCG activation-induced cytidine deaminase Endogenous
Aire NM_009646.1 - cytoplasm,cytoplasm,binding,DNA binding,chromatin binding,nucleus,nucleus,nucleus,plasma membrane,zinc ion binding,actin cytoskeleton,regulation of translation,humoral immune response,regulation of transcription, DNA-dependent,metal ion binding,translation regulator activity,positive regulation of transcription from RNA polymerase II promoter,intracellular part,histone binding,transcription, DNA-dependent,transcription regulatory region DNA binding,positive regulation of transcription, DNA-dependent,identical protein binding TCCAGGAACCCGAGGGGCCGTGGAAGGGATCCTTATCCAGCAGGTGTTTGAGTCAGGAAGATCCAAGAAGTGCATTCAGGTTGGGGGAGAGTTTTATACA autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy) Endogenous
Akt3 NM_011785.3 AI851531|D930002M15Rik|Nmf350 mitochondrial genome maintenance,phosphorylation,membrane,kinase activity,protein serine/threonine kinase activity,protein serine/threonine kinase activity,transferase activity,ATP binding,ATP binding,positive regulation of sodium ion transport,cellular response to insulin stimulus,peptidyl-serine phosphorylation,peptidyl-threonine phosphorylation,nucleus,protein kinase activity,cytoplasm,Golgi apparatus,plasma membrane,signal transduction,transferase activity, transferring phosphorus-containing groups,protein kinase C binding,nucleotide binding,soluble fraction,protein phosphorylation,phospholipid binding GTTGTCATGTTAGCAAGCGCAGCTCCAATTCACAGATCATTGCCTGCGTTTTCTTTTGACCCATGTGCAAGGAATGTACACACCCATTAGAATCATGCAC thymoma viral proto-oncogene 3 Endogenous
Alcam NM_009655.1 AI853494|BEN|CD166|DM-GRASP|MuSC|SC1 cell adhesion,integral to membrane,membrane,axon,protein binding,axon guidance,motor axon guidance,external side of plasma membrane,neuronal cell body ATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTGTG activated leukocyte cell adhesion molecule Endogenous
Ambp NM_007443.3 AI194774|ASPI|HI-30|Intin4|Itil|UTI transporter activity,peptidase inhibitor activity,protein-chromophore linkage,extracellular region,serine-type endopeptidase inhibitor activity,transport,binding,plasma membrane,IgA binding,heme binding,protein homodimerization activity,microsome,protein maturation,negative regulation of peptidase activity,negative regulation of endopeptidase activity CCACAAATCCAAATGGAACATAACCTTGGAATCCTATGTGGTCCACACCAACTATGACGAATATGCCATTTTCCTTACCAAGAAGTCCAGCCACCACCAC alpha 1 microglobulin/bikunin Endogenous
Amica1 NM_001005421.4 AMICA|Crea7|Gm638 cell adhesion,integral to membrane,membrane,cell junction,plasma membrane,tight junction,heterophilic cell-cell adhesion,neutrophil chemotaxis,cell adhesion molecule binding,transepithelial transport TTTCAAAGGACAATTTCACCAACTCCTCCAACTGATAAGGGTCAGCAGGGCATCCTGAATGGAAATCAGCTGGTGATCATTGTGGGGATCGTCTGTGCCA adhesion molecule, interacts with CXADR antigen 1 Endogenous
Angpt1 NM_009640.3 1110046O21Rik|Ang-1|Ang1 negative regulation of cell adhesion,activation of transmembrane receptor protein tyrosine kinase activity,heparin biosynthetic process,receptor tyrosine kinase binding,positive regulation of protein ubiquitination,negative regulation of apoptotic process,positive regulation of blood vessel endothelial cell migration,membrane raft,positive chemotaxis,positive regulation of protein kinase B signaling cascade,signal transduction,Tie receptor signaling pathway,Tie receptor signaling pathway,cell differentiation,multicellular organismal development,patterning of blood vessels,vasculogenesis,positive regulation of vascular endothelial growth factor receptor signaling pathway,ovarian follicle development,positive regulation of anti-apoptosis,protein homooligomerization,anti-apoptosis,anti-apoptosis,positive regulation of peptidyl-tyrosine phosphorylation,positive regulation of peptidyl-tyrosine phosphorylation,endoderm development,transmembrane receptor protein tyrosine kinase signaling pathway,angiogenesis,cell-su GGGCTGGAAGGAGTATAAAATGGGTTTTGGGAATCCCTCTGGTGAATATTGGCTTGGGAACGAGTTCATTTTTGCAATAACCAGTCAGAGGCAGTACATG angiopoietin 1 Endogenous
Angpt2 NM_007426.3 Agpt2|Ang-2|Ang2 extracellular space,extracellular space,extracellular region,nucleus,plasma membrane,metal ion binding,cell differentiation,angiogenesis,receptor tyrosine kinase binding,multicellular organismal development,receptor binding,signal transduction,negative regulation of blood vessel endothelial cell migration,negative regulation of positive chemotaxis,negative regulation of cell-substrate adhesion,protein binding,vascular endothelial growth factor receptor binding,endoderm development,transmembrane receptor protein tyrosine kinase signaling pathway,negative regulation of angiogenesis,blood vessel morphogenesis,Tie receptor signaling pathway,Tie receptor signaling pathway,blood vessel remodeling,hemopoiesis,regulation of angiogenesis,cell projection,positive regulation of angiogenesis GAAGAATGTTCCGTGGGAGTTCAGCAGTAAATAACTGGAAAACAGAACACTTAGATGGTGCAGATAAATCTTGGGACCACATTCCTCTAAGCACGGTTTC angiopoietin 2 Endogenous
Anp32b NM_130889.2 2410015B15Rik|PAL31|PHAPI2a|Ssp29 nucleus,nucleus,nucleus,molecular_function,S phase of mitotic cell cycle AAGATATCAGCACCTTGGAGCCGTTGAAAAGGTTGGATTGTCTGAAAAGCCTGGATCTGTTTGGCTGTGAGGTCACTAACCGGAGTGATTACCGAGAAAC acidic (leucine-rich) nuclear phosphoprotein 32 family, member B Endogenous
Anxa1 NM_010730.2 Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1 cell projection,negative regulation of acute inflammatory response,positive regulation of vesicle fusion,positive regulation of prostaglandin biosynthetic process,mitochondrial membrane,positive regulation of apoptotic process,negative regulation of apoptotic process,protein complex,negative regulation of protein secretion,cellular response to hydrogen peroxide,arachidonic acid secretion,phospholipase inhibitor activity,calcium ion binding,cornified envelope,structural molecule activity,calcium-dependent phospholipid binding,peptide cross-linking,phospholipid binding,keratinocyte differentiation,extracellular space,protein binding, bridging,nucleus,membrane,cytoplasm,cilium,alpha-beta T cell differentiation,plasma membrane,cell surface receptor signaling pathway,protein binding,phospholipase A2 inhibitor activity,insulin secretion,protein homodimerization activity,single-stranded DNA binding,single-stranded RNA binding,signal transduction,cell cycle,regulation of cell proliferation,sarcolemma GGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAGGGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACA annexin A1 Endogenous
Apoe NM_009696.3 AI255918 cytoplasm,late endosome,Golgi apparatus,dendrite,early endosome,microtubule,antioxidant activity,extracellular space,extracellular space,extracellular space,extracellular space,extracellular region,beta-amyloid binding,transport,lipid transport,lipid transporter activity,lipid transporter activity,phospholipid binding,phospholipid binding,aging,triglyceride metabolic process,anti-apoptosis,induction of apoptosis,G-protein coupled receptor signaling pathway,response to oxidative stress,nitric oxide mediated signal transduction,heparin binding,cholesterol catabolic process,cellular calcium ion homeostasis,lipid binding,cGMP-mediated signaling,negative regulation of blood coagulation,lipoprotein metabolic process,lipoprotein metabolic process,lipoprotein metabolic process,lipoprotein metabolic process,cholesterol transporter activity,protein localization,lipoprotein biosynthetic process,lipid metabolic process,lipoprotein catabolic process,positive regulation of cholesterol efflux,positive regulation of choleste GCTAAGGACTTGTTTCGGAAGGAGCTGACTGGCCAATCACAATTGCGAAGATGAAGGCTCTGTGGGCCGTGCTGTTGGTCACATTGCTGACAGGATGCCT apolipoprotein E Endogenous
App NM_007471.2 Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp acetylcholine receptor binding,intracellular membrane-bounded organelle,neuron apoptosis,PTB domain binding,regulation of gene expression,negative regulation of peptidase activity,positive regulation of peptidase activity,growth factor receptor binding,negative regulation of endopeptidase activity,synaptic growth at neuromuscular junction,ciliary rootlet,spindle midzone,neuron projection development,cytoplasmic vesicle,collateral sprouting in absence of injury,smooth endoplasmic reticulum calcium ion homeostasis,neuromuscular junction,suckling behavior,visual learning,Notch signaling pathway,G2 phase of mitotic cell cycle,apoptotic process,axon midline choice point recognition,regulation of translation,cellular copper ion homeostasis,mRNA polyadenylation,metal ion binding,axonogenesis,dendrite development,dendrite development,neuron remodeling,axon cargo transport,axon cargo transport,apical part of cell,positive regulation of mitotic cell cycle,positive regulation of transcription from RNA polymerase II prom GTGAGCGACGCCCTTCTCGTGCCCGACAAGTGCAAGTTCCTACACCAGGAGCGGATGGATGTTTGTGAGACCCATCTTCACTGGCACACCGTCGCCAAAG amyloid beta (A4) precursor protein Endogenous
Arg1 NM_007482.3 AI|AI256583|Arg-1|PGIF extracellular space,hydrolase activity,urea cycle,metal ion binding,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines,positive regulation of endothelial cell proliferation,cytoplasm,arginine metabolic process,regulation of L-arginine import,arginase activity,arginase activity,manganese ion binding,collagen biosynthetic process,neuron projection,neuronal cell body,protein homotrimerization GTACATTGGCTTGCGAGACGTAGACCCTGGGGAACACTATATAATAAAAACTCTGGGAATTAAGTATTTCTCCATGACTGAAGTAGACAAGCTGGGGATT arginase, liver Endogenous

Total number of rows: 770

Table truncated, full table size 555 Kbytes.




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