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Status
Public on Jul 19, 2016
Title
Agilent-074036 SurePrint G3 Rat GE v2 8x60K Microarray G4858A (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Catalog gene expression microarray for Rat, v2 8x60K
Submission date
Jul 12, 2016
Last update date
Dec 02, 2016
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (537)
GSM2231183 , GSM2231184 , GSM2242437 , GSM2242438 , GSM2242439 , GSM2242440
GSM2242441 ,
GSM2242442 ,
GSM2242443 ,
GSM2242444 ,
GSM2242445 ,
GSM2242446 ,
GSM2242447 ,
GSM2242448 ,
GSM2242449 ,
GSM2242450 ,
GSM2242451 ,
GSM2242452 ,
GSM2242453 ,
GSM2242454 ,
GSM2242455 ,
GSM2242456 ,
GSM2242457 ,
GSM2242458 ,
GSM2242459 ,
GSM2242460 ,
GSM2304977 ,
GSM2304978 ,
GSM2304979 ,
GSM2304980 ,
GSM2304981 ,
GSM2304982 ,
GSM2304983 ,
GSM2304984 ,
GSM2304985 ,
GSM2304986 ,
GSM2304987 ,
GSM2579225 ,
GSM2579226 ,
GSM2579227 ,
GSM2579228 ,
GSM2579229 ,
GSM2579230 ,
GSM2579231 ,
GSM2643977 ,
GSM2643978 ,
GSM2643979 ,
GSM2643980 ,
GSM2643981 ,
GSM2643982 ,
GSM2643983 ,
GSM2643984 ,
GSM2674331 ,
GSM2674332 ,
GSM2674515 ,
GSM2674516 ,
GSM2796821 ,
GSM2796822 ,
GSM2796823 ,
GSM2796824 ,
GSM2796825 ,
GSM2796826 ,
GSM2948477 ,
GSM2948478 ,
GSM2948479 ,
GSM2948480 ,
GSM2948481 ,
GSM2948482 ,
GSM2948483 ,
GSM2948484 ,
GSM3301795 ,
GSM3301796 ,
GSM3301797 ,
GSM3301798 ,
GSM3301799 ,
GSM3301800 ,
GSM3301801 ,
GSM3301802 ,
GSM3346208 ,
GSM3346209 ,
GSM3346210 ,
GSM3346211 ,
GSM3346212 ,
GSM3346213 ,
GSM3346214 ,
GSM3346215 ,
GSM3346216 ,
GSM3346217 ,
GSM3346218 ,
GSM3346219 ,
GSM3346220 ,
GSM3346221 ,
GSM3346222 ,
GSM3346223 ,
GSM3346224 ,
GSM3346225 ,
GSM3346226 ,
GSM3346227 ,
GSM3346228 ,
GSM3346229 ,
GSM3346230 ,
GSM3346231 ,
GSM3561593 ,
GSM3561594 ,
GSM3561595 ,
GSM3561596 ,
GSM3561597 ,
GSM3561598 ,
GSM3561599 ,
GSM3561600 ,
GSM3561601 ,
GSM3561602 ,
GSM3561603 ,
GSM3561604 ,
GSM3561605 ,
GSM3561606 ,
GSM3561607 ,
GSM3561608 ,
GSM3561609 ,
GSM3561610 ,
GSM3561611 ,
GSM3561612 ,
GSM3561613 ,
GSM3561614 ,
GSM3561615 ,
GSM3561616 ,
GSM3561617 ,
GSM3561618 ,
GSM3561619 ,
GSM3561620 ,
GSM3561621 ,
GSM3561622 ,
GSM3561623 ,
GSM3561624 ,
GSM3590012 ,
GSM3590013 ,
GSM3590014 ,
GSM3590015 ,
GSM3590016 ,
GSM3590017 ,
GSM3590018 ,
GSM3590019 ,
GSM3590020 ,
GSM3590021 ,
GSM3590022 ,
GSM3590023 ,
GSM4282795 ,
GSM4282796 ,
GSM4282797 ,
GSM4282798 ,
GSM4282799 ,
GSM4282800 ,
GSM4282801 ,
GSM4282802 ,
GSM4282803 ,
GSM4282804 ,
GSM4282805 ,
GSM4282806 ,
GSM4290695 ,
GSM4290696 ,
GSM4290697 ,
GSM4318838 ,
GSM4318839 ,
GSM4318840 ,
GSM4318841 ,
GSM4318842 ,
GSM4318843 ,
GSM4318844 ,
GSM4318845 ,
GSM4318846 ,
GSM4318847 ,
GSM4318848 ,
GSM4318849 ,
GSM4318850 ,
GSM4318851 ,
GSM4318852 ,
GSM4318853 ,
GSM4318854 ,
GSM4318855 ,
GSM4318856 ,
GSM4318857 ,
GSM4318858 ,
GSM4318859 ,
GSM4318860 ,
GSM4458784 ,
GSM4458785 ,
GSM4458786 ,
GSM4458787 ,
GSM4458788 ,
GSM4458789 ,
GSM4458790 ,
GSM4458791 ,
GSM4458792 ,
GSM4458793 ,
GSM4458794 ,
GSM4458795 ,
GSM4458796 ,
GSM4459533 ,
GSM4459534 ,
GSM4459535 ,
GSM4459536 ,
GSM4459537 ,
GSM4459538 ,
GSM4459539 ,
GSM4459540 ,
GSM4459541 ,
GSM4459542 ,
GSM4459543 ,
GSM4459544 ,
GSM4459545 ,
GSM4459546 ,
GSM4459547 ,
GSM4459548 ,
GSM4459549 ,
GSM4592644 ,
GSM4592645 ,
GSM4592646 ,
GSM4592647 ,
GSM4592648 ,
GSM4592649 ,
GSM4592650 ,
GSM4592651 ,
GSM4592652 ,
GSM4592653 ,
GSM4592654 ,
GSM4592655 ,
GSM4592656 ,
GSM4592657 ,
GSM4592658 ,
GSM4592659 ,
GSM4592660 ,
GSM4592661 ,
GSM4592662 ,
GSM4592663 ,
GSM4592664 ,
GSM4592665 ,
GSM4592666 ,
GSM4661946 ,
GSM4661947 ,
GSM4661948 ,
GSM4661949 ,
GSM4661950 ,
GSM4661951 ,
GSM4661952 ,
GSM4661953 ,
GSM4731924 ,
GSM4731925 ,
GSM4731926 ,
GSM4731927 ,
GSM4731928 ,
GSM4731929 ,
GSM4731930 ,
GSM4731931 ,
GSM4732305 ,
GSM4732306 ,
GSM4732307 ,
GSM4732308 ,
GSM4732327 ,
GSM4732328 ,
GSM4732329 ,
GSM4732330 ,
GSM4732752 ,
GSM4732753 ,
GSM4732754 ,
GSM4732755 ,
GSM4732762 ,
GSM4732763 ,
GSM4732764 ,
GSM4732765 ,
GSM4733867 ,
GSM4733868 ,
GSM4733869 ,
GSM4733870 ,
GSM4733984 ,
GSM4733985 ,
GSM4733986 ,
GSM4733987 ,
GSM4733992 ,
GSM4733993 ,
GSM4733994 ,
GSM4733995 ,
GSM4734090 ,
GSM4734091 ,
GSM4734092 ,
GSM4734093 ,
GSM4736308 ,
GSM4736309 ,
GSM4736310 ,
GSM4736311 ,
GSM4736312 ,
GSM4736313 ,
GSM4736314 ,
GSM4736315 ,
GSM4736400 ,
GSM4736401 ,
GSM4736402 ,
GSM4736403 ,
GSM4742273 ,
GSM4742274 ,
GSM4742275 ,
GSM4742276 ,
GSM4742472 ,
GSM4742473 ,
GSM4742474 ,
GSM4742475 ,
GSM4742476 ,
GSM4742477 ,
GSM4742478 ,
GSM4742479 ,
GSM4742480 ,
GSM4742481 ,
GSM4742482 ,
GSM4742483 ,
GSM4910779 ,
GSM4910780 ,
GSM4910781 ,
GSM4910782 ,
GSM4910783 ,
GSM4910784 ,
GSM5335157 ,
GSM5335158 ,
GSM5335159 ,
GSM5335160 ,
GSM5335161 ,
GSM5335162 ,
GSM5335163 ,
GSM5335164 ,
GSM6813514 ,
GSM6813515 ,
GSM6813516 ,
GSM6813517 ,
GSM6813518 ,
GSM6813519 ,
GSM6813520 ,
GSM6813521 ,
GSM6813522 ,
GSM6813523 ,
GSM6813524 ,
GSM6813525 ,
GSM6813526 ,
GSM6813527 ,
GSM6813528 ,
GSM6813529 ,
GSM6813530 ,
GSM6813531 ,
GSM7188081 ,
GSM7188082 ,
GSM7188083 ,
GSM7188084 ,
GSM7188085 ,
GSM7188086 ,
GSM7188087 ,
GSM7188088 ,
GSM7188089 ,
GSM7188090 ,
GSM7188091 ,
GSM7188092 ,
GSM7188093 ,
GSM7188094 ,
GSM7188095 ,
GSM7188096 ,
GSM7188097 ,
GSM7188098 ,
GSM7188099 ,
GSM7188100 ,
GSM7188101 ,
GSM7188102 ,
GSM7188103 ,
GSM7188104 ,
GSM7188105 ,
GSM7188106 ,
GSM7188107 ,
GSM7188108 ,
GSM7188109 ,
GSM7188110 ,
GSM7188111 ,
GSM7188112 ,
GSM7188221 ,
GSM7188222 ,
GSM7188223 ,
GSM7188224 ,
GSM7188225 ,
GSM7188226 ,
GSM7188227 ,
GSM7188228 ,
GSM7188229 ,
GSM7188230 ,
GSM7188231 ,
GSM7188232 ,
GSM7188233 ,
GSM7188234 ,
GSM7188235 ,
GSM7188236 ,
GSM7188237 ,
GSM7188238 ,
GSM7188239 ,
GSM7188240 ,
GSM7188241 ,
GSM7188242 ,
GSM7188243 ,
GSM7188244 ,
GSM7188245 ,
GSM7188246 ,
GSM7188247 ,
GSM7188248 ,
GSM7188249 ,
GSM7188250 ,
GSM7188251 ,
GSM7188252 ,
GSM7188253 ,
GSM7188254 ,
GSM7188255 ,
GSM7188256 ,
GSM7188257 ,
GSM7188258 ,
GSM7188259 ,
GSM7188260 ,
GSM7188261 ,
GSM7188262 ,
GSM7188263 ,
GSM7188264 ,
GSM7188265 ,
GSM7188266 ,
GSM7188267 ,
GSM7188268 ,
GSM7188269 ,
GSM7188270 ,
GSM7188271 ,
GSM7188272 ,
GSM7188273 ,
GSM7188274 ,
GSM7188275 ,
GSM7188276 ,
GSM7188277 ,
GSM7188278 ,
GSM7188279 ,
GSM7188280 ,
GSM7188281 ,
GSM7188282 ,
GSM7188283 ,
GSM7188284 ,
GSM7188285 ,
GSM7188286 ,
GSM7188287 ,
GSM7188288 ,
GSM7188289 ,
GSM7188290 ,
GSM7188291 ,
GSM7188292 ,
GSM7188293 ,
GSM7188294 ,
GSM7188295 ,
GSM7188296 ,
GSM7188297 ,
GSM7188298 ,
GSM7188299 ,
GSM7188300 ,
GSM7188301 ,
GSM7188302 ,
GSM7188303 ,
GSM7188304 ,
GSM7188305 ,
GSM7188306 ,
GSM7188307 ,
GSM7188308 ,
GSM7188309 ,
GSM7188310 ,
GSM7188311 ,
GSM7188312 ,
GSM7188313 ,
GSM7188314 ,
GSM7188315 ,
GSM7188316 ,
GSM7188317 ,
GSM7188318 ,
GSM7188319 ,
GSM7188320 ,
GSM7188321 ,
GSM7188322 ,
GSM7188323 ,
GSM7188324 ,
GSM7188325 ,
GSM7188326 ,
GSM7188327 ,
GSM7188328 ,
GSM7188329 ,
GSM7188330 ,
GSM7188331 ,
GSM7188332 ,
GSM7188333 ,
GSM7188334 ,
GSM7188335 ,
GSM7188336 ,
GSM7188337 ,
GSM7188338 ,
GSM7188339 ,
GSM7188340 ,
GSM7188341 ,
GSM7188342 ,
GSM7188343 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (48)
GSE84294 Decreases in 15-lipoxigenase metabolites in Olmsted syndrome model rats
GSE84596 Effect of chronic MDPV on striatal gene expression
GSE86523 Hepatocytic parental progenitor cells of rat small hepatocytes
GSE97852 Transcriptomic study of NR8383 cells following exposure to zinc oxide nanoparticles NM110
GSE99436 Transcriptomic study of NR8383 cells following exposure to multi-walled carbon nanotubes (NM401)
GSE100189 Gender differences of gene expression profiles in brain cardiovascular centers of SHRs [nucleus of solitarii tract]
GSE100198 Gender differences of gene expression profiles in brain cardiovascular centers of SHRs [hypothalamus]
GSE104387 Purification of replicating pancreatic β-cells for gene expression studies
GSE107689 Gender differences of gene expression profiles in brain cardiovascular centers of SHRs
GSE109685 Transcriptomic profile in the liver of rats treated with the chemopreventive butyrate-containing structured lipids.
GSE117487 Effect of cell passage number on gene expression in NR8383 macrophages
GSE118737 Loss of voltage dependent anion channel 1 affects mitochondrial bioenergetics in rat dopamine cells
GSE118738 The effects of the pesticide fipronil in rat N27 dopaminergic cells
GSE125042 Effect of landiolol on sex-related transcriptomic changes in myocardium during sepsis
GSE126063 Self-renewal capability of hepatocytic parental progenitor cells derived from an adult rat liver is maintained for a long term in the chemically defined medium cultured on lamini111
GSE144207 1H NMR metabolomic and transcriptomic analyses reveal urinary metabolites as biomarker candidates in response to protein undernutrition in adult rats
GSE144547 Gene expression in crossed cerebellar diaschisis in a transient middle cerebral artery occlusion rat model
GSE145479 Inhaled titanium dioxyde-induced gene expression profile in rat lung
GSE148253 Effects of repetitive Iodine Thyroid Blocking on the Fetal Brain and Thyroid in rats: a Systems Biology approach [Thyroid]
GSE148280 Effects of repetitive Iodine Thyroid Blocking on the Fetal Brain and Thyroid in rats: a Systems Biology approach [Cortex]
GSE148281 Effects of repetitive Iodine Thyroid Blocking on the Foetal Brain and Thyroid in rats: a Systems Biology approach
GSE151881 Infection of rat epithelial cells with a Salmonella typhimurium strain expressing Rck, PagN and the T3SS1 system (14028Sur) and two Salmonella typhimurium strains invalidated for entry factors (i.e. D(rck, pagN) and DinvASur)
GSE154022 Extracellular vesicles containing miR-146a-5p activate hepatocytic progenitor cells in regenerating retrorsin-treated rat livers
GSE156457 Transcriptomic study of NR8383 rat macrophages cells following exposure to Printex90 (ALI)
GSE156458 Transcriptomic study of NR8383 rat macrophages cells in control condition (DMEM culture medium supplemented with 10% of fetal bovine serum)
GSE156489 Transcriptomic study of NR8383 rat macrophages cells in control condition (water, H2O)
GSE156493 Transcriptomic study of NR8383 rat macrophages cells in submerged condition (control)
GSE156509 Transcriptomic study of NR8383 rat macrophages cells following exposure to TiO2 (NM105, p25 anatase/rutile)
GSE156511 Transcriptomic study of NR8383 rat macrophages cells following exposure to NM403 carbon nanotubes
GSE156564 Transcriptomic study of NR8383 rat macrophages cells following exposure to TiO2 (NRCWE001)
GSE156571 Transcriptomic study of NR8383 rat macrophages cells following exposure to multi-walled carbon nanotubes (NRCWE006)
GSE156573 Transcriptomic study of NR8383 rat macrophages cells following exposure to NiZnFe2O4
GSE156587 Transcriptomic study of NR8383 rat macrophages cells following exposure to Fe2O3 (NRCWE018)
GSE156659 Transcriptomic study of NR8383 rat macrophages cells following exposure to zinc iron oxide (ZnFe2O4, NRCWE021)
GSE156660 Transcriptomic study of NR8383 rat macrophages cells following exposure to COOH-functionalized carbon nanotubes (NRCWE042)
GSE156666 Transcriptomic study of NR8383 rat macrophages cells following exposure to NH2-functionalized carbon nanotubes (NRCWE049)
GSE156691 Transcriptomic study of NR8383 rat macrophages cells following exposure to pristine single-walled carbon nanotubes (NRCWE055)
GSE156694 Transcriptomic study of NR8383 rat macrophages cells following exposure to carbon black (Printex 90)
GSE156695 Transcriptomic study of NR8383 rat macrophages cells following exposure to ZnO 4 µg/mL and ZnO 16 µg/mL
GSE161611 circRNAs, miRNAs and mRNAs expression profiling in rBMSCs affected by Ta-modified Ti surface or simple Ti surface
GSE175478 Gene expression profiling for cigarette smoke (CS) exposed lung treated with human umbilical cord mesenchymal stem cells derived extracellular vesicle (hUCMSC-EV) and human umbilical cord derived mesenchymal stem cells (hUC-MSC)
GSE220747 Impact of exercise on brain-bone marrow interactions in chronic stress: potential mechanisms preventing stress-induced hypertension
GSE230139 Diet supplemented with polyphenol- and glucuronoxylan-rich fiber extract regulates colonic barrier function and cell proliferation in healthy rats
GSE230147 Transcriptional changes in the rat brain induced by repetitive transcranial magnetic stimulation (rTMS)_IN_VITRO
GSE230148 Transcriptional changes in the rat brain induced by repetitive transcranial magnetic stimulation (rTMS)_EX_VIVO
GSE230149 Transcriptional changes in the rat brain induced by repetitive transcranial magnetic stimulation (rTMS)_IN_VIVO
GSE230150 Transcriptional changes in the rat brain induced by repetitive transcranial magnetic stimulation (rTMS).
GSE252918 Human α-synuclein overexpression upregulates SKOR1 in a rat model of simulated nigrostriatal aging
Relations Alternative to
GPL22740
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
192
328
GE_BrightCorner
--GE_BrightCorner
pos
2
192
326
DarkCorner
--DarkCorner
pos
3
192
324
DarkCorner
--DarkCorner
pos
4
192
322
ERCC-00085_231
--ERCC-00085_231
pos
DQ883669
unmapped
5
192
320
A_43_P20870
FALSE
NM_001106645
NM_001106645 297989
Ddx58
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Rn.38642
ENSRNOT00000060765
ref|NM_001106645|ens|ENSRNOT00000060765|tc|TC617851|gb|XM_216380
chr5:57629539-57629480
rn|5q22
Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 (Ddx58), mRNA [NM_001106645]
GO:0002230(positive regulation of defense response to virus by host)|GO:0003690(double-stranded DNA binding)|GO:0003725(double-stranded RNA binding)|GO:0003727(single-stranded RNA binding)|GO:0005524(ATP binding)|GO:0005737(cytoplasm)|GO:0005923(tight junction)|GO:0008270(zinc ion binding)|GO:0009597(detection of virus)|GO:0009615(response to virus)|GO:0010628(positive regulation of gene expression)|GO:0015629(actin cytoskeleton)|GO:0030334(regulation of cell migration)|GO:0032587(ruffle membrane)|GO:0032725(positive regulation of granulocyte macrophage colony-stimulating factor production)|GO:0032727(positive regulation of interferon-alpha production)|GO:0032728(positive regulation of interferon-beta production)|GO:0032755(positive regulation of interleukin-6 production)|GO:0032757(positive regulation of interleukin-8 production)|GO:0039529(RIG-I signaling pathway)|GO:0042802(identical protein binding)|GO:0042993(positive regulation of transcription factor import into nucleus)|GO:0043330(response to exogenous dsRNA)|GO:0045087(innate immune response)|GO:0045944(positive regulation of transcription from RNA polymerase II promoter)
TGTGTCGCTTCTCATATGCGAACATCATCTTAAAAACTTTCCGCACGGACAGAAAGGGAA
6
192
318
A_44_P1163786
FALSE
XR_594587
XR_594587 102552171
LOC102552171
heat shock protein 75 kDa, mitochondrial-like
ref|XR_594587
chr10:11746862-11746921
rn|10q12
PREDICTED: Rattus norvegicus heat shock protein 75 kDa, mitochondrial-like (LOC102552171), ncRNA [XR_594587]
TTTTGAAAAGGAAAACAGGAACGGGGTGGTCTTCATTCTGTTTCCACTGTCAAGTGTGGG
7
192
316
A_44_P1146259
FALSE
XR_355512
XR_355512 102551023
LOC102551023
uncharacterized LOC102551023
ref|XR_355512
chr7:57445451-57445392
rn|7q22
PREDICTED: Rattus norvegicus uncharacterized LOC102551023 (LOC102551023), transcript variant X2, ncRNA [XR_355512]
TAAAAACCTGTGCTTCTGTTGGGAGTTAATCCCAATGCACCAGTTAGAGTCCTAAGCCCA
8
192
314
A_44_P200636
FALSE
XM_002724504
XM_002724504 Rn.3337
ENSRNOT00000004127
ens|ENSRNOT00000004127|ref|XM_002724504|ref|XM_577104|tc|TC595773
chr10:48713343-48707432
rn|10q23
PREDICTED: Rattus norvegicus centromere protein V (Cenpv), transcript variant X1, mRNA [XM_002724504]
GCTTCTCGCTTCAAACTCCTGAAGGGTGCTGAGAGCATAACCACCTACACATTTAACACG
9
192
312
A_44_P267993
FALSE
XM_008771923
XM_008771923 Rn.217087
ENSRNOT00000071978
ens|ENSRNOT00000071978|ref|XM_008771923|ref|XM_008774049|ref|XM_002725307
unmapped
PREDICTED: Rattus norvegicus prenyl (decaprenyl) diphosphate synthase, subunit 1 (Pdss1), transcript variant X2, mRNA [XM_008771923]
CAAAGGAAAAGCCTTTAGGCCGATTATTGTGGTGCTAATGGCCCGAGCGTGTAATATTCA
10
192
310
A_44_P651091
FALSE
NM_017158
NM_017158 29298
Cyp2c7
cytochrome P450, family 2, subfamily c, polypeptide 7
Rn.1247
ENSRNOT00000040325
ref|NM_017158|ens|ENSRNOT00000040325|ref|XM_008759609|gb|FQ218330
chr1:243702865-243702806
rn|1q53
Rattus norvegicus cytochrome P450, family 2, subfamily c, polypeptide 7 (Cyp2c7), mRNA [NM_017158]
GO:0003674(molecular_function)|GO:0004497(monooxygenase activity)|GO:0005506(iron ion binding)|GO:0005737(cytoplasm)|GO:0005789(endoplasmic reticulum membrane)|GO:0006805(xenobiotic metabolic process)|GO:0007584(response to nutrient)|GO:0008392(arachidonic acid epoxygenase activity)|GO:0008395(steroid hydroxylase activity)|GO:0010243(response to organic nitrogen)|GO:0014070(response to organic cyclic compound)|GO:0016705(oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)|GO:0016712(oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen)|GO:0019373(epoxygenase P450 pathway)|GO:0019825(oxygen binding)|GO:0020037(heme binding)|GO:0032496(response to lipopolysaccharide)|GO:0032526(response to retinoic acid)|GO:0042493(response to drug)|GO:0042738(exogenous drug catabolic process)|GO:0043231(intracellular membrane-bounded organelle)|GO:0043434(response to peptide hormone stimulus)|GO:0045471(response to ethanol)|GO:0055114(oxidation-reduction process)|GO:0070330(aromatase activity)
GTTGTTTCTATTCTTGACAACCATTTTACAGAACTTTAACCTGAAATCTCTGGTTCAACC
11
192
308
A_64_P030162
FALSE
NM_012965
NM_012965 25461
Hrh2
histamine receptor H 2
Rn.138113
ENSRNOT00000024580
ref|NM_012965|ens|ENSRNOT00000024580|ref|XR_596619|tc|TC579767
chr17:16498026-16497967
rn|17p14
Rattus norvegicus histamine receptor H 2 (Hrh2), mRNA [NM_012965]
GO:0001588(dopamine receptor activity, coupled via Gs)|GO:0001696(gastric acid secretion)|GO:0001697(histamine-induced gastric acid secretion)|GO:0001698(gastrin-induced gastric acid secretion)|GO:0001963(synaptic transmission, dopaminergic)|GO:0003382(epithelial cell morphogenesis)|GO:0004969(histamine receptor activity)|GO:0005887(integral to plasma membrane)|GO:0006955(immune response)|GO:0007186(G-protein coupled receptor signaling pathway)|GO:0007191(adenylate cyclase-activating dopamine receptor signaling pathway)|GO:0007606(sensory perception of chemical stimulus)|GO:0007612(learning)|GO:0007613(memory)|GO:0008542(visual learning)|GO:0010579(positive regulation of adenylate cyclase activity involved in G-protein coupled receptor signaling pathway)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0035240(dopamine binding)|GO:0045907(positive regulation of vasoconstriction)|GO:0048167(regulation of synaptic plasticity)|GO:0048565(digestive tract development)|GO:0048732(gland development)|GO:0060158(phospholipase C-activating dopamine receptor signaling pathway)|GO:0071420(cellular response to histamine)|GO:1900139(negative regulation of arachidonic acid secretion)
AAGCTCCAAGTGTGGAGTGGGACAGAACTCACACACCCCCAGGGAAACCCAATCAGGTAA
12
192
306
A_44_P152233
FALSE
XR_146473 Rn.129777
ENSRNOT00000003730
ens|ENSRNOT00000003730|gb|XR_146473|gb|XM_346337
chrX:98882342-98882283
rn|Xq31
PREDICTED: Rattus norvegicus 40S ribosomal protein S2-like (LOC681406), misc_RNA [XR_146473]
ACAATGGCCACGTTGGTCTTGGTGTTAAGTGCTCCGAGGAGGTAGCCATTACTATCCGAG
13
192
304
A_43_P14012
FALSE
NM_001108043
NM_001108043 314320
Mlh3
mutL homolog 3
Rn.119254
ENSRNOT00000033493
ref|NM_001108043|ens|ENSRNOT00000033493|ref|XM_006240310|ref|XM_006240311
chr6:109281051-109280992
rn|6q31
Rattus norvegicus mutL homolog 3 (Mlh3), mRNA [NM_001108043]
GO:0000793(condensed chromosome)|GO:0000794(condensed nuclear chromosome)|GO:0000795(synaptonemal complex)|GO:0001673(male germ cell nucleus)|GO:0003674(molecular_function)|GO:0003682(chromatin binding)|GO:0003697(single-stranded DNA binding)|GO:0005524(ATP binding)|GO:0005575(cellular_component)|GO:0005712(chiasma)|GO:0006298(mismatch repair)|GO:0006974(response to DNA damage stimulus)|GO:0007130(synaptonemal complex assembly)|GO:0007131(reciprocal meiotic recombination)|GO:0007140(male meiosis)|GO:0007144(female meiosis I)|GO:0008104(protein localization)|GO:0008150(biological_process)|GO:0016887(ATPase activity)|GO:0019237(centromeric DNA binding)|GO:0030983(mismatched DNA binding)|GO:0032300(mismatch repair complex)
TGCAATCTTATCCCTGGTTTTTGATAGTCCTACGGTTTTTAAAACCAGAAGTCAGTGTTT
14
192
302
A_64_P100406
FALSE
NM_053643
NM_053643 114101
Cds2
CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
Rn.212746
ENSRNOT00000028888
ref|NM_053643|ens|ENSRNOT00000028888|gb|AB052898|tc|TC578200
chr3:120063932-120063991
rn|3q36
Rattus norvegicus CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 (Cds2), mRNA [NM_053643]
GO:0004605(phosphatidate cytidylyltransferase activity)|GO:0005743(mitochondrial inner membrane)|GO:0005783(endoplasmic reticulum)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016024(CDP-diacylglycerol biosynthetic process)
GGGCAGGTCACCAAGGCCAGCCCAGCTGCTGTGACTTAGATAATGAGAAGCTTCAACTCA
15
192
300
A_44_P1129942
FALSE
XR_589107
XR_589107 103690457
LOC103690457
uncharacterized LOC103690457
Rn.5805
ref|XR_589107|ref|XR_594117|gb|M93018|tc|TC619893
chr8:110506792-110506733
rn|8q32
PREDICTED: Rattus norvegicus uncharacterized LOC103690457 (LOC103690457), ncRNA [XR_589107]
ACAATCAGTGTGAAAACTGGTCGCTTTTCTTTTCTGGTTTCATAAATGTCTTCCATACAC
16
192
298
A_44_P1116327
FALSE
XM_008773380
XM_008773380 103690879
Fam133a
family with sequence similarity 133, member A
ref|XM_008773380
unmapped
PREDICTED: Rattus norvegicus family with sequence similarity 133, member A (Fam133a), transcript variant X2, mRNA [XM_008773380]
ATTGATGCTGAGGTCATAAAGAGGGAATCAACTACCAACATAACCCACGCAGCATCACAG
17
192
296
A_64_P134445
FALSE
NM_001126280
NM_001126280 314472
Tmem179
transmembrane protein 179
Rn.22400
ENSRNOT00000060943
ref|NM_001126280|ens|ENSRNOT00000060943|gb|BC160847|tc|TC605948
chr6:137339728-137339669
rn|6q32
Rattus norvegicus transmembrane protein 179 (Tmem179), mRNA [NM_001126280]
GACAGTGATGAGCCCTATACCTCCATGTGTCTGATCCTCAAGTCAAACTAAAATAAAGAC
18
192
294
A_42_P512838
FALSE
NM_001106884
NM_001106884 301227
Trem2
triggering receptor expressed on myeloid cells 2
Rn.106975
ENSRNOT00000018351
ref|NM_001106884|ens|ENSRNOT00000018351|ref|XM_006244425|ref|XM_006244424
chr9:8059124-8059065
rn|9q12
Rattus norvegicus triggering receptor expressed on myeloid cells 2 (Trem2), mRNA [NM_001106884]
GO:0001530(lipopolysaccharide binding)|GO:0002588(positive regulation of antigen processing and presentation of peptide antigen via MHC class II)|GO:0016021(integral to membrane)|GO:0032497(detection of lipopolysaccharide)|GO:0032499(detection of peptidoglycan)|GO:0042834(peptidoglycan binding)|GO:0043231(intracellular membrane-bounded organelle)|GO:0050731(positive regulation of peptidyl-tyrosine phosphorylation)|GO:0050850(positive regulation of calcium-mediated signaling)|GO:0070374(positive regulation of ERK1 and ERK2 cascade)|GO:0070392(detection of lipoteichoic acid)|GO:0070891(lipoteichoic acid binding)|GO:0071223(cellular response to lipoteichoic acid)|GO:0071224(cellular response to peptidoglycan)|GO:0097028(dendritic cell differentiation)|GO:0097110(scaffold protein binding)|GO:2000350(positive regulation of CD40 signaling pathway)
GAGCAGGAATACTGGTGTGCTGCATCTGCGTTGAGTGGGGAAGACAGCTGGATGGTTGCT
19
192
292
A_44_P661269
FALSE
AA997110 Rn.73589
gb|AA997110
chr11:56687511-56687570
rn|11q21
UI-R-C0-hr-d-07-0-UI.s1 UI-R-C0 Rattus norvegicus cDNA clone UI-R-C0-hr-d-07-0-UI 3', mRNA sequence [AA997110]
TCTCAGTAAAAAGAGAAGATAGTTGGCTCTCCAGAAACTTCCTATTCTTTCAATCCCTGG
20
192
290
ERCC-00120_69
--ERCC-00120_69
pos
DQ854992
unmapped
62976 37911 Kbytes .Supplementary file Size Download File type/resource GPL22145_074036_D_GEO_20150914.txt.gz
10.4 Mb
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