GEO Accession viewer

GSE85036	Post-Translational Dosage Compensation Buffers Genetic Perturbations to Stoichiometry of Protein Complexes
GSE85253	Meiotic double-strand break end resection mapping by S1Seq
GSE85545	Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress
GSE85622	TORC1 shapes the SUMO proteome to control RNA polymerase III activity
GSE86428	A High Resolution Profile of NMD Substrates in Yeast
GSE90105	Protointrons in Saccharomyces sp.
GSE90660	ChIP-Seq of constitutively expressed Ndt80-Myc in S. cerevisiae
GSE90661	ChIP-Seq of Ndt80-Myc in S. cerevisiae during meiosis and sporulation
GSE90919	Ubiquitination of Stalled Ribosome Triggers Ribosome-associated Quality Control [SET2]
GSE90920	Ubiquitination of Stalled Ribosome Triggers Ribosome-associated Quality Control
GSE93240	NUCLEAR FATE OF YEAST SNORNA IS DETERMINED BY COTRANSCRIPTIONAL RNT1 CLEAVAGE
GSE93959	The RNA helicase Ded1p suppresses translation initiation from near-cognate start codons
GSE95633	MINC Regulates Pervasive Transcription in Yeast and Mammals
GSE96841	Smc3 deacetylation by Hos1 facilitates efficient dissolution of sister chromatid cohesion during anaphase
GSE99161	Transcription Rate Strongly Affects Splicing Fidelity and Co-transcriptionality in Budding Yeast
GSE99499	Endoplasmic reticulum–mitochondria junction is required for iron homeostasis
GSE100034	The histone H3-H4 tetramer is a copper reductase enzyme
GSE103073	Dbf4 recruitment by forkhead transcription factors defines an upstream rate-limiting step in determining replication origin firing
GSE103285	Gene expression response to glucose/fructose in WT vs. tps1-
GSE104356	Transcriptome reprogramming of key transcription factor deletion strains of Saccharomyces cerevisiae compared with the wild type strain by RNA-Seq
GSE106248	Transfer RNA Genes Affect Chromosome Architecture and Function [RNA-seq]
GSE106249	Transfer RNA Genes Affect Chromosome Architecture and Function [ChIP-seq]
GSE106250	Transfer RNA Genes Affect Chromosome Architecture and Function
GSE106329	Defining the physiological role of SRP in protein-targeting efficiency and specificity
GSE106572	Accurate Design of Translational Output by a Neural Network Model of Ribosome Distribution
GSE107420	Chromatin structure governs stalled replication fork processing and cohesin loading
GSE107841	Genome-wilde identification of decapping substrates in the yeast Saccharomyces cervisiae
GSE108059	Spliceosome profiling visualizes the operations of a dynamic RNP in vivo at nucleotide resolution
GSE108580	Next Generation Sequencing Facilitates Comparative Transcriptomes Analysis for Saccharomyces cerevisiae lines generated by SCRaMbLE
GSE109235	Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes
GSE110000	TSS identification of Rap1-regulated transcripts by 5' end RNA sequencing
GSE110004	Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor
GSE110575	Genome-wide Map of R-Loop-Induced Damage Reveals How a Subset of R-Loops Contributes to Genomic Instability
GSE111058	Pervasive transcription-dependent chromatin remodeling influences the replication initiation program
GSE112891	The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins
GSE113567	Peroxisome function relies on organelle-associated mRNA translation
GSE113746	Brr6 Plays a Role in Gene Recruitment and Transcriptional Regulation at the Nuclear envelope
GSE114428	Genome-wilde expression profiling analysis of yeast cells lacking the decapping activator Scd6
GSE114882	Nascent Polypeptide Domain Topology and Elongation Rate Direct the Cotranslational Hierarchy of Hsp70 and TRiC/CCT
GSE115013	Dynamics of calcineurin-regulated gene expression in S. cerevisiae
GSE115014	Dynamics of calcineurin-regulated gene expression in the absence of Hog1 in S. cerevisiae
GSE115023	Rewiring of cell cycle regulated gene expression by calcineurin
GSE115412	Opposing chromatin remodeler activities control initiation frequency and start site selection
GSE115990	SUMO-targeted ubiquitin ligases (STUbLs) reduce the toxicity and abnormal transcriptional activity associated with a mutant, aggregation-prone fragment of huntingtin
GSE116224	Small RNA-seq analysis shows reduced tRNA levels in cdk1-as1 mutants
GSE117881	A Role for Chromatin Remodeling in Cohesin Loading onto Chromosomes
GSE118581	The Miniature-chemostat Aging Device: A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of replicatively aging yeast
GSE119560	mRNA stability as measured by thiouracil incorporation in the presence and absence of translational inhibitors
GSE120051	H3K36 methylation and the chromodomain protein Eaf3 are required for proper co-transcriptional spliceosome assembly
GSE120497	Extensive Splicing across the Saccharomyces cerevisiae genome
GSE122620	Casein Kinase II Phosphorylation of Spt6 Enforces Transcriptional Fidelity by Maintaining Spn1-Spt6 Interaction
GSE123238	E-ChRPs: Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning [ChIP-Seq]
GSE123239	E-ChRPs: Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning
GSE125038	Cycloheximide can distort measurements of mRNA levels and translation efficiency
GSE125684	Unique and Shared Roles for Histone H3K36 Methylation States in Transcription Regulation Functions
GSE125855	Mapping polymerase usage by tracking ribonucleotide incorporation (HydEn-seq) during DNA replication
GSE128578	Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome.
GSE128672	Transcription Profiles of [ESI+] and Set3C loss of function
GSE128905	Expression data of FMN supplementation from Saccharomyces cerevisiae
GSE129832	Regulation of the Hsf1-dependent transcriptome via conserved bipartite contacts with Hsp70 promotes survival in yeast
GSE130332	Free glycans derived from O-mannosylated glycoproteins suggest the presence of an O-glycoprotein degradation pathway in yeast
GSE130946	Fine chromatin-driven mechanism of transcription interference by antisense noncoding transcription
GSE131214	RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1
GSE131408	The Ccr4-Not complex monitors the translating ribosome for codon optimality
GSE131702	Transcriptome-wide expression profile of yeast under different carbon sources
GSE133558	DNA polymerase Δ synthesizes both strands during break-induced replication
GSE134295	RNA-seq analysis of control and DIS3, RRP6, CSL4, ENP1, and SRM1 gene mutants in budding yeast.
GSE135056	RNA PolyRNA Polymerase II CTD phosphatase Rtr1 prevents premature transcription termination
GSE135102	The nucleosome core particle remembers its position through DNA replication and transcription
GSE135336	Paralog-specific phenotypes of ribosomal protein mutants identify translational control mechanisms in the cell cycle and replicative longevity
GSE135430	Comparison of RNA Isolation Methods in Yeast on RNA-Seq: Implications for Differential Expression and Meta-Analyses
GSE135476	Abundances of transcripts, proteins, metabolites, and lipids in the cell cycle of budding yeast
GSE136602	Mec1 is activated at the onset of normal S phase by low dNTP pools impeding DNA replication [sequencing]
GSE136605	Mec1 is activated at the onset of normal S phase by low dNTP pools impeding DNA replication
GSE136897	Nucleosome profiles in strains with different numbers of nucleosomes at HML and HMR
GSE137706	An alternative transcriptome shapes cell fate transitions in yeast (mRNA-seq)
GSE137707	An alternative transcriptome shapes cell fate transitions in yeast (TSS-seq)
GSE137708	An alternative transcriptome shapes cell fate transitions in yeast (TES-seq)
GSE137711	High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts
GSE138055	Division of Labor between PCNA Loaders in DNA Replication and Sister Chromatid Cohesion Establishment [BrdU-IP-ssSeq, ChIP-ssSeq and eSPAN analysis]
GSE138056	Division of Labor Between PCNA Loaders in DNA Replication and Sister Chromatid Cohesion Establishment
GSE138557	A Non-Amyloid Prion Particle that Activates a Heritable Gene Expression Program.
GSE138893	Transcription levels of a long noncoding RNA shape a cell fate regulatory circuit (mRNA-seq)
GSE138895	Transcription levels of a long noncoding RNA shape a cell fate regulatory circuit (PolII associated RNA-seq)
GSE138896	Transcription levels of a long noncoding RNA shape a cell fate regulatory circuit (TSS-seq)
GSE138897	Transcription levels of a long noncoding RNA shape a cell fate regulatory circuit (TES-seq)
GSE138898	Transcription levels of a noncoding RNA orchestrate opposing regulatory and cell fate outcomes in yeast
GSE139097	Binding to the Ribosome by Eukaryotic Initiation Factor 4B Drives Yeast Translational Control in Response to Urea
GSE140177	Integrated Genomic Analysis Reveals Key Features of Long Undecoded Transcript Isoform (LUTI)-based Gene Repression
GSE142528	Sulfur-dependent translational regulation via methylation multiplicity of 18S rRNA
GSE142839	Transcriptome Analysis Reveals the Topography of Local Changes after Separate Transformations of the Same Reporter in Hundreds Loci of Yeast
GSE143236	Temperature sensitive Mutant Proteome Profiling: a novel tool for the characterization of the global impacts of missense mutants on the proteome
GSE143292	Measuring the dependence of the yeast heat shock response on intracellular pH during stress
GSE143305	Histone Exchange is Associated with Activator Function at Transcribed Promoters and with Repression at Histone Loci
GSE143572	Isolation and analysis of rereplicated DNA by Rerep-seq
GSE144250	The Ccr4-Not complex monitors the translating ribosome for codon optimality
GSE144808	Nucleosome profiles in strains with different inter-NDR distances at HML
GSE145206	Differential scaling of gene expression with cell size may explain size control in budding yeast.
GSE145695	Detecting chromatin interactions along and between sister chromatids with SisterC
GSE147065	The RSC complex remodels nucleosomes in transcribed coding sequences and promotes transcription in Saccharomyces cerevisiae
GSE147204	RNA-seq data from three Saccharomyces cerevisiae strains with different protein productivity
GSE147290	THE SPATIAL REGULATION OF CONDENSIN ACTIVITY IN CHROMOSOME CONDENSATION
GSE148170	A role for the Mre11–Rad50–Xrs2 complex in gene expression and chromosome organization
GSE148305	Chromosome arm length, and a species-specific determinant, define chromosome arm width [S. cerevisiae]
GSE148307	Chromosome arm length, and a species-specific determinant, define chromosome arm width
GSE149016	Selectivity of mRNA degradation by autophagy in yeast
GSE150804	Comparison of Transcriptomes of Wild Type and Paraquat-treated cells by Next Generation RNA Sequencing
GSE151370	Elucidating the role of Zuo1 protein on the translational control of gene expression in Saccharomyces cerevisiae
GSE151416	Cohesin residency determines chromatin loop patterns
GSE151478	Expression data from Saccharomyces cerevisiae
GSE151553	Cohesin residency determines chromatin loop patterns
GSE152034	Genome-wide mapping sites of H2B-SUMO chromatin binding in WT and set1 mutant
GSE152036	Genome-wide mapping sites of Set3-TAP chromatin binding in WT and H2B 4KA mutant
GSE152037	Gene expression profiles in WT, set3Δ, and H2B 4KA
GSE152039	Set1 and Set3
GSE152850	Ageing-dependent ribosome pausing and nascent polypeptide aggregation
GSE153539	An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and independent dynamics of H3K36 methylation
GSE153930	A prion accelerates proliferation at the expense of lifespan
GSE155060	Intron retention analysis using isogrowth profiling
GSE155138	FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner [ChIP-exo]
GSE155143	FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner [MNase-ChIP-Seq]
GSE155144	FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner
GSE155701	DNA damage-induced transcriptome changes in budding yeasts Saccharomyces cerevisiae and Candida glabrata
GSE156535	The ribosome collision sensor Hel2 functions as preventive quality control in the secretory pathway
GSE158318	A barcoded genome-scale library of inducible alleles reveals principles of synthetic gene control [Seq]
GSE158319	A barcoded genome-scale library of inducible alleles reveals principles of synthetic gene control
GSE158622	The chromatin remodeler Ino80 mediates alternative RNAPII pausing site determination
GSE159329	Sensing of individual stalled 80S ribosomes by Fap1 for non-functional rRNA turnover. Li et al
GSE160167	Dynamic post-transcriptional regulation by Mrn1 links cell wall homeostasis to mitochondrial structure and function
GSE160262	The Asymmetric Distribution of RNAPII and Nucleosomes on Replicated Daughter Genomes is caused by Differences in Replication Timing between the Lagging and the Leading Strand [ChIP-seq]
GSE160350	Genetic interaction mapping informs integrative structure determination of protein complexes
GSE160368	Substrate discrimination and quality control require each catalytic activity of TRAMP and the nuclear RNA exosome
GSE160509	The Asymmetric Distribution of RNAPII and Nucleosomes on Replicated Daughter Genomes is caused by Differences in Replication Timing between the Lagging and the Leading Strand
GSE161580	A role for condensin in mediating transcriptional adaptation to environmental stimuli. [RNA-Seq]
GSE161581	A role for condensin in mediating transcriptional adaptation to environmental stimuli. [TT-Seq]
GSE161582	A role for condensin in mediating transcriptional adaptation to environmental stimuli.
GSE163106	A Budding Yeast Model for Human Disease Mutations in the EXOSC2 Cap Subunit of the RNA Exosome
GSE163741	Protein Kinase A (PKA) inhibition in Saccharomyces cerevisiae and Kluyveromyces lactis
GSE164275	Context-specific action of macrolide antibiotics on the eukaryotic ribosome
GSE169748	Connection of core and and tail Mediator modules restrains transcription from TFIID-dependent promoters
GSE171846	transcriptional reponse of yeast glucose sensing pathway mutants to glucose addition
GSE171981	Connection of core and tail Mediator modules restrains transcription from TFIID-dependent promoters [ChIP-Seq]
GSE172017	Regulation of translation under mitoprotein-induced stress in Saccharomyces cerevisiae
GSE173802	Expression data from Saccharomyces cerevisiae
GSE174157	Comparison of Transcriptomes of Wild Type and aan1∆ cells by Next Generation RNA Sequencing
GSE174268	Inducible meiotic cDNA libraries for genome-wide studies of gene isoforms
GSE174707	PAR-CLIP of Slf1 and Sro9 during optimal growth and oxidative stress
GSE175398	Pleiotropic effects of trans-regulatory mutations on gene expression and fitness
GSE175991	Antisense-mediated repression of SAGA-dependent genes involves the HIR histone chaperone
GSE176296	Methylation of Q105 on histone H2A is part of a dynamic regulatory mechanism integrating metabolism with ribosome biogenesis through recruitment of Nhp2 [RNA-Seq]
GSE176302	Methylation of Q105 on histone H2A is part of a dynamic regulatory mechanism integrating metabolism with ribosome biogenesis through recruitment of Nhp2
GSE179254	RSC mediated nucleosome positioning and GRFs form barriers in promoters to limit divergent noncoding transcription [RNA-Seq]
GSE179255	RSC mediated nucleosome positioning and GRFs form barriers in promoters to limit divergent noncoding transcription [nascent RNA-Seq]
GSE179256	RSC mediated nucleosome positioning and GRFs form barriers in promoters to limit divergent noncoding transcription
GSE179468	Functional characterization of the transcription programs underlying phase transition in the BSL3 pathogen Coccidioides immitis
GSE180164	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress [copy_number]
GSE180167	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress
GSE185570	Expression data from Saccharomyces cerevisiae to evaluate the impact of suppressors of Aβ42 cytotoxicity on recombinant protein production
GSE186795	Ribosome-bound Upf1 forms distinct 80S complexes and conducts mRNA surveillance
GSE188294	Evolution of Natural Lifespan Variation and Molecular Strategies of Extended Lifespan
GSE188455	Double-stranded RNA formation leads to preferential nuclear export and gene expression
GSE189278	Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores.
GSE189312	Actin binding proteins expression levels when modifying the actin sequence
GSE193291	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast [iCLIP_miCLIP-seq]
GSE193558	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast [ime1D_ndt80D]
GSE193559	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast [pho92D_ime4D]
GSE193561	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast.
GSE196945	Nucleosome position mapping by micrococcal nuclease analysis in S. cerevisiae of Top1-AID/Top2-AID strains with auxin in galactose-rich media
GSE197657	Functional crosstalk between the cohesin loader and a chromatin remodeler
GSE199740	Role of yeast Nup60 lysine 467 acetylation in regulation of transcription
GSE199904	Reduced sphingolipid biosynthesis modulates proteostasis networks to enhance longevity
GSE200087	The S. cerevisiae m6A reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts [RNA-seq]
GSE200089	The S. cerevisiae m6A reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts.
GSE203259	Evidence that conserved essential genes are enriched for pro-longevity factors
GSE207267	loss of DBP1 during meiosis in yeast
GSE209857	RNA structure landscape of S. cerevisiae introns
GSE214203	Crac analysis of the Bud22 ribosome biogenesis factor
GSE215896	RNase H2 degrades toxic RNA:DNA hybrids behind stalled forks to promote replication restart
GSE217259	NADcapPro Seq and CircNAD –Methods for Accurate Profiling of NAD and Non-Canonical RNA Caps in Eukaryotes
GSE219048	Transcription Analysis of yZSJ025
GSE224637	The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles
GSE225783	The synergestic effect of adaptive laboratory evolution on H2O2 and galactose on the gene expression profiles of genetically modified, taxadiene-producing Saccharomyces cerevisiae before and during the oxidative stress re-exposure
GSE226065	Genome-wide gene expression responses to experimental manipulation of Saccharomyces cerevisiae Repressor Activator Protein 1 (Rap1) expression level
GSE226247	Natural variation in the consequences of gene overexpression during osmotic stress [BAR-Seq]
GSE226248	Natural variation in the consequences of gene overexpression during osmotic stress
GSE227252	The 3’ Untranslated Region (3’UTR) Coding Sequence of PHO84, Rather Than the Antisense RNA, Promotes Gene Repression
GSE231758	Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E [RNA-Seq]
GSE231759	Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E
GSE232684	Investigation of Rap1 binding occupancy in global H3-depletion condition [RNA-seq]
GSE232685	Investigation of Rap1 binding occupancy in global H3-depletion condition
GSE236273	Simultaneous Mapping of DNA Binding and Nucleosome Positioning with SpLiT-ChEC
GSE237174	Preservation of orphan ribosomal proteins during stress in chaperone-stirred condensates
GSE238069	N-terminal acetylation of the Set1-COMPASS fine-tunes H3K4 methylation patterns (ChIPseq for ard1 deletion strain)
GSE238070	N-terminal acetylation of the Set1-COMPASS fine-tunes H3K4 methylation patterns
GSE240331	Defective transfer of parental histone decreases frequency of homologous recombination in budding yeast
GSE246951	ChEC-seq2: an improved chromatin endogenous cleavage sequencing method and bioinformatic analysis pipeline for mapping in vivo protein–DNA interactions
GSE248219	Natural variation in yeast reveals multiple paths for acquiring higher stress resistance
GSE248550	Separating the impact of flocculation upon global gene transcription in a yeast Cyc8 mutant
GSE252049	DNA Polymerase Delta Governs Parental Histone Transfer to DNA Replication Lagging Strand
GSE252951	Double stranded RNA formation leads to preferential nuclear export and gene expression
GSE254492	Defining the mechanisms and properties of post-transcriptional regulatory disordered regions by high-throughput functional profiling
GSE263221	Investigating determinants of aneuploidy toxicity using gene duplication in Saccharomyces cerevisiae
GSE265963	Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts
GSE267843	ChEC-seq2 of RNA Polymerase II and Preinitation Complex in S. cerevisiae
GSE267888	Gene expression analysis of yeast strains with a nonsense mutation in the eRF3-coding gene highlights possible mechanisms of adaptation