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Platform GPL21517 Query DataSets for GPL21517
Status Public on Nov 30, 2016
Title Agilent-037209 RIKEN_AT_sORF1110
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16037209 or 2537209.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Feb 25, 2016
Last update date Nov 30, 2016
Contact name Kousuke Hanada
E-mail(s) kohanada@bio.kyutech.ac.jp
Organization name Kyushu Institute Technology
Department Department of Bioscience and Bioinformatics
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
 
Samples (14) GSM2071913, GSM2071914, GSM2071915, GSM2071916, GSM2071917, GSM2071918 
Series (2)
GSE78515 Transcriptome analysis of annotated coding genes and sORF in AtPropep3 (AT13) and treated AtPep3 (AT13 peptide)
GSE184689 Mitochondria-originating novel coding gene sORF2146 controls flowering

Data table header descriptions
ID Agilent feature number
NAME NAME
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ORF_LIST Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID NAME CONTROL_TYPE GENE_SYMBOL ORF_LIST ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
ATRIKEN15208 ATRIKEN15208 FALSE NO_XB AT3G09240 AT3G09240|TAIR|AT3G09240 chr3:2837956-2835668 Protein kinase protein with tetratricopeptide repeat domain TAAAGTTTCTTATGTCAGCTCTTTCAAGACTTGAGAAAAGAGCTGAGTTATGGCCCAACG
ATRIKEN19875 ATRIKEN19875 FALSE NO_XB AT4G02380 AT4G02380|TAIR|AT4G02380 chr4:1046997-1046204 senescence-associated gene 21 CAAGAAACCACTTACTTCGAAAATGGCTCGTTCTATCTCTAACGTTAAGATCGTATCTGC
ATRIKEN33232 ATRIKEN33232 FALSE unmapped CGGTCACTTCACATTAGTCATGCTAACAAGTACCAAACAAATTTGAGTGAATGAATACAG
ATRIKEN12506 ATRIKEN12506 FALSE NO_XB AT3G11550 AT3G11550|TAIR|AT3G11550 chr3:3638195-3639197 Uncharacterised protein family (UPF0497) TCTTACAGTTCGAAGCTAGCTACGACGATCTACCAACTTTCCAGTTCTTTGTGATTGCCA
ATRIKEN09810 ATRIKEN09810 FALSE NO_XB AT2G24480 AT2G24480|TAIR|AT2G24480 chr2:10397588-10398184 Zinc finger, C3HC4 type (RING finger) family protein GATGCCTTATTGTAAGCATTGTTATCATGAAGGATGTGTCACCAAGTGGGTGATTGGTCA
ATRIKEN07652 ATRIKEN07652 FALSE NO_XB AT2G28160 AT2G28160|TAIR|AT2G28160 chr2:12004708-12006122 FER-like regulator of iron uptake CTTAACATATACCTTAGATGGGACATGCTTCGAACAGAGCTTAAACTTGCCTAACCTGAA
ATRIKEN34057 ATRIKEN34057 FALSE NO_XB chr4_-_4714651-4714893|sORF|chr4_-_4714651-4714893 chr4:4714651-4714893 GGCAACGAGGTATTATGGTATGCATGGAAAGGTAGAAGATTCAAGATTAGCTTTGAAGTC
ATRIKEN10256 ATRIKEN10256 FALSE NO_XB AT2G20690 AT2G20690|TAIR|AT2G20690 chr2:8923305-8924974 lumazine-binding family protein TCATGATGATTGCTTATACGCAACAGAATGTAGTGATTCCGACTAAGAAGATTGGGCAGA
ATRIKEN04286 ATRIKEN04286 FALSE NO_XB AT1G16460 AT1G16460|TAIR|AT1G16460 chr1:5622624-5619641 rhodanese homologue 2 AGTGCAGCAACTGAGGCTATAGAGAAGATCTATCAAGGACAAACAATTAGCCCAATAACT
ATRIKEN16215 ATRIKEN16215 FALSE NO_XB AT3G04945 AT3G04945|TAIR|AT3G04945 chr3:1369532-1369114 low-molecular-weight cysteine-rich 18 CTGTGATTTGTACACTGCTCCTTTGGTTCCTAAGCAATGTTTTTGCCACTATGATTGCTA
ATRIKEN11920 ATRIKEN11920 FALSE NO_XB AT3G58420 AT3G58420|TAIR|AT3G58420 chr3:21612409-21609307 TRAF-like superfamily protein AAACACTTGGCAGCAAAGGAGAGAAACTTTTCTCAGAATTGGAAAGTGATAAGACCTGGA
ATRIKEN16315 ATRIKEN16315 FALSE NO_XB AT3G47341 AT3G47341|TAIR|AT3G47341 chr3:17441421-17441567 unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). TTATCCGGCTGAGTCAGCAAGTGGATAGGTACTTATCTGACGGTGTAAAAACTGTCCAAT
ATRIKEN09505 ATRIKEN09505 FALSE NO_XB AT2G31430 AT2G31430|TAIR|AT2G31430 chr2:13396192-13397162 Plant invertase/pectin methylesterase inhibitor superfamily protein CGACACAAGTGACCTTTTGTGAAAAGGACGTTTCGTTTGTGAAAGTATGCCAAATTCATT
ATRIKEN33532 ATRIKEN33532 FALSE NO_XB chr2_-_11619706-11619843|sORF|chr2_-_11619706-11619843 chr2:11619706-11619843 ATTGAGATCGTGGGAGTTTGCAGAAGTAGCGGTTATGGTTTAAGTGCTATCAAACCTTTT
ATRIKEN28003 ATRIKEN28003 FALSE COM_XB RAFL23-28-B01, AT2G26730 RAFL23-28-B01,AT2G26730|Genbank|RAFL23-28-B01|TAIR|AT2G26730 chr2:11391458-11391593 CTTTTATTTGTATTTGGTGTTTACAATTTACAGGTTTAAATCAAAATTCAGTCTAAAACA
ATRIKEN23245 ATRIKEN23245 FALSE NO_XB AT5G57015 AT5G57015|TAIR|AT5G57015 chr5:23071097-23074843 casein kinase I-like 12 TACGGTTACCTCAAAAGAATATTCCGGGACCTCTTTATCCGCGAAGGGTTTCAATTCGAT
ATRIKEN00862 ATRIKEN00862 FALSE NO_XB AT1G17345 AT1G17345|TAIR|AT1G17345 chr1:5940423-5941210 SAUR-like auxin-responsive protein family TCGGTCGAAAGAGGGTAGTAGTATCTTGCCCCAAATGATGATAAATTGTAACATATGCTA
ATRIKEN05108 ATRIKEN05108 FALSE NO_XB AT1G52380 AT1G52380|TAIR|AT1G52380 chr1:19508983-19511539 NUP50 (Nucleoporin 50 kDa) protein TTGACAAACACAAAGATAGTAAACCAATGGAGAAAGCAGCAGAAAAATCAGCTCTTCCTC
ATRIKEN14445 ATRIKEN14445 FALSE NO_XB AT3G22360 AT3G22360|TAIR|AT3G22360 chr3:7904156-7905384 alternative oxidase 1B TGGAACTGAATGGAAATGGAGTTGCTTTAGGCCATGGGAGACATATAAATCAGATCTGAC
ATRIKEN33787 ATRIKEN33787 FALSE NO_XB chr1_+_13781579-13781833|sORF|chr1_+_13781579-13781833 chr1:13781579-13781833 GGATTGACTCGAACCTGCAGCACTCATCAATCAGGCAATAAACAAGAGAAATATAGATCA

Total number of rows: 35635

Table truncated, full table size 7815 Kbytes.




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Supplementary data files not provided

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