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| Status |
Public on Feb 05, 2016 |
| Title |
Illumina HiSeq 4000 (Escherichia coli) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Escherichia coli |
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| Submission date |
Feb 05, 2016 |
| Last update date |
Feb 05, 2016 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (733)
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GSM2055270, GSM2055271, GSM2055272, GSM2055273, GSM2055274, GSM2462933
GSM2462934, GSM2462935, GSM2462936, GSM2462937, GSM2462938, GSM2693962, GSM2693963, GSM3090368, GSM3090369, GSM3090370, GSM3090371, GSM3090372, GSM3090373, GSM3188366, GSM3188367, GSM3188368, GSM3188369, GSM3188370, GSM3188371, GSM3188372, GSM3188373, GSM3188374, GSM3188375, GSM3188376, GSM3188377, GSM3188378, GSM3188379, GSM3188380, GSM3188381, GSM3188382, GSM3188383, GSM3391905, GSM3391906, GSM3463565, GSM3463566, GSM3463567, GSM3463568, GSM3463569, GSM3463570, GSM3463571, GSM3463572, GSM3463573, GSM3463574, GSM3463575, GSM3463576, GSM3463577, GSM3463578, GSM3463579, GSM3463580, GSM3463581, GSM3463582, GSM3463583, GSM3463584, GSM3463585, GSM3463586, GSM3463587, GSM3463588, GSM3494382, GSM3494383, GSM3494384, GSM3494385, GSM3494386, GSM3494387, GSM3511499, GSM3511500, GSM3511501, GSM3511502, GSM3511503, GSM3511504, GSM3511505, GSM3511506, GSM3511507, GSM3511508, GSM3511509, GSM3511510, GSM3511511, GSM3511512, GSM3511513, GSM3511514, GSM3511515, GSM3511516, GSM3511517, GSM3511518, GSM3511519, GSM3511520, GSM3511521, GSM3511522, GSM3511523, GSM3511524, GSM3511525, GSM3511526, GSM3511527, GSM3511528, GSM3511529, GSM3511530, GSM3511531, GSM3511532, GSM3511533, GSM3511534, GSM3511535, GSM3511536, GSM3511537, GSM3511538, GSM3511539, GSM3854833, GSM3854834, GSM3854835, GSM3854836, GSM3854837, GSM3854838, GSM3940495, GSM3940496, GSM3940497, GSM3940498, GSM3940499, GSM3940500, GSM3940501, GSM3940502, GSM3940503, GSM3940504, GSM3940505, GSM3940506, GSM3940507, GSM3940508, GSM3940509, GSM3940510, GSM3940511, GSM3940512, GSM3940513, GSM3940514, GSM3940515, GSM3940516, GSM3963046, GSM3963047, GSM3963048, GSM3963049, GSM3963050, GSM3963051, GSM3963052, GSM3963053, GSM3963054, GSM3963055, GSM3963056, GSM3963057, GSM3963058, GSM3963059, GSM3963060, GSM3963061, GSM3963062, GSM3963063, GSM3963064, GSM3963065, GSM3963066, GSM3963067, GSM3963068, GSM3963069, GSM3963070, GSM3963071, GSM3963072, GSM3963073, GSM3963074, GSM3963075, GSM3963076, GSM3963077, GSM3963078, GSM3963079, GSM3963080, GSM3963081, GSM4188855, GSM4188856, GSM4188857, GSM4188858, GSM4188859, GSM4188860, GSM4188861, GSM4188862, GSM4188863, GSM4291788, GSM4291789, GSM4291790, GSM4291791, GSM4291792, GSM4291793, GSM4291794, GSM4291795, GSM4291796, GSM4291797, GSM4291798, GSM4291799, GSM4291800, GSM4291801, GSM4291802, GSM4291803, GSM4291804, GSM4291805, GSM4291806, GSM4291807, GSM4291808, GSM4291809, GSM4291810, GSM4291811, GSM4291812, GSM4291813, GSM4291814, GSM4291815, GSM4291816, GSM4291817, GSM4291818, GSM4291819, GSM4291820, GSM4291821, GSM4291822, GSM4291823, GSM4291824, GSM4291825, GSM4291826, GSM4291827, GSM4291828, GSM4291829, GSM4291830, GSM4291831, GSM4291832, GSM4291833, GSM4291834, GSM4291835, GSM4291836, GSM4291837, GSM4291838, GSM4291839, GSM4291840, GSM4291841, GSM4291842, GSM4291843, GSM4291844, GSM4291845, GSM4291846, GSM4291847, GSM4291848, GSM4291849, GSM4291850, GSM4291851, GSM4291852, GSM4291853, GSM4291854, GSM4291855, GSM4291856, GSM4291857, GSM4291858, GSM4291859, GSM4291860, GSM4291861, GSM4291862, GSM4291863, GSM4291864, GSM4291865, GSM4291866, GSM4291867, GSM4291868, GSM4291869, GSM4291870, GSM4291871, GSM4291872, GSM4291873, GSM4291874, GSM4291875, GSM4291876, GSM4291877, GSM4291878, GSM4291879, GSM4291880, GSM4291881, GSM4291882, GSM4291883, GSM4291884, GSM4291885, GSM4291886, GSM4291887, GSM4291888, GSM4291889, GSM4291890, GSM4291891, GSM4291892, GSM4291893, GSM4291894, GSM4291895, GSM4291896, GSM4291897, GSM4291898, GSM4291899, GSM4291900, GSM4291901, GSM4291902, GSM4291903, GSM4291904, GSM4291905, GSM4291906, GSM4291907, GSM4291908, GSM4291909, GSM4291910, GSM4291911, GSM4291912, GSM4291913, GSM4291914, GSM4291915, GSM4291916, GSM4291917, GSM4291918, GSM4291919, GSM4291920, GSM4291921, GSM4291922, GSM4423221, GSM4423222, GSM4423223, GSM4423224, GSM4423225, GSM4423226, GSM4423227, GSM4423228, GSM4477485, GSM4477486, GSM4477487, GSM4477488, GSM4518513, GSM4518514, GSM4518515, GSM4543906, GSM4543907, GSM4543908, GSM4543909, GSM4543910, GSM4543911, GSM4543912, GSM4543913, GSM4543914, GSM4543915, GSM4543916, GSM4543917, GSM4543918, GSM4543919, GSM4543920, GSM4543921, GSM4543922, GSM4543923, GSM4543924, GSM4543925, GSM4543930, GSM4543931, GSM4543932, GSM4543933, GSM4551458, GSM4551459, GSM4551460, GSM4551461, GSM4551462, GSM4551463, GSM4551464, GSM4551465, GSM4551466, GSM4551467, GSM4551468, GSM4551469, GSM4551470, GSM4551471, GSM4551472, GSM4551473, GSM4551474, GSM4551475, GSM4551476, GSM4551477, GSM4654627, GSM4654628, GSM4654629, GSM4654630, GSM4654631, GSM4654632, GSM4654633, GSM4654634, GSM4654635, GSM4654636, GSM4654637, GSM4654638, GSM4654639, GSM4654640, GSM4654641, GSM4654642, GSM4654643, GSM4654644, GSM4654645, GSM4654646, GSM4654647, GSM4654648, GSM4654649, GSM4654650, GSM4654651, GSM4654652, GSM4654653, GSM4654654, GSM4654655, GSM4654656, GSM4654657, GSM4654658, GSM4654659, GSM4654660, GSM4654661, GSM4654662, GSM4654663, GSM4654664, GSM4654665, GSM4654666, GSM4725475, GSM4725476, GSM4725477, GSM4725478, GSM4725479, GSM4725480, GSM4725481, GSM4725482, GSM4725483, GSM4725484, GSM4725485, GSM4725486, GSM4725487, GSM4725488, GSM4725489, GSM4725490, GSM4725491, GSM4725492, GSM4725493, GSM4725494, GSM4725495, GSM4725496, GSM4725497, GSM4725498, GSM4766279, GSM4766280, GSM4766281, GSM4766282, GSM4766283, GSM4766284, GSM4859681, GSM4859682, GSM4859683, GSM4859684, GSM4859685, GSM4859686, GSM4859687, GSM4859688, GSM4859689, GSM4859690, GSM4859691, GSM4859692, GSM4859693, GSM4859694, GSM4859695, GSM4876107, GSM4876108, GSM4876109, GSM4876110, GSM4876111, GSM4876112, GSM4876113, GSM4955031, GSM4955032, GSM4955033, GSM4955034, GSM4955035, GSM4955036, GSM5290500, GSM5290501, GSM5290502, GSM5290503, GSM5290504, GSM5441029, GSM5441030, GSM5509255, GSM5509256, GSM5509257, GSM5509258, GSM5509259, GSM5509260, GSM5509261, GSM5509262, GSM5509263, GSM5530957, GSM5530958, GSM5530959, GSM5530960, GSM5551880, GSM5551881, GSM5551882, GSM5551883, GSM5551884...
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| Series (45)
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| GSE77617 |
Operon mRNAs are organized into ORF-centric structures that predict translation efficiency |
| GSE100817 |
Division-induced DNA double strand breaks in the chromosome terminus region of Escherichia coli lacking RecBCD DNA repair enzyme |
| GSE112878 |
TosR-mediated regulation of adhesins and biofilm formation in uropathogenic Escherichia coli |
| GSE115725 |
The mechanistic basis of diverse, environmentally dependent genetic interaction in a metabolic pathway |
| GSE120032 |
Functional identification of butanol-tolerant genes mediated by the transcriptional factor Rob in Escherichia coli |
| GSE122295 |
Expression profiling to identify independent regulatory signals in Escherichia coli |
| GSE123795 |
Identification of potential tobramycin-resistant mutagenesis of Escherichia coli strains after spaceflight |
| GSE134256 |
Experimental evolution reveals the genetic basis and systems biology of superoxide stress tolerance |
| GSE134667 |
Condensation of nucleoid during environmental adaptation is regulated by dynamic HU interactions |
| GSE140847 |
E. coli ATCC 8739 transcriptomics under culture medium optimization and adaptive laboratory evolution for glycerol consumption |
| GSE144604 |
Accelerated knowledge discovery from omics data by optimal experimental design |
| GSE147272 |
Transcriptional profiling of the probiotic E. coli Nissle 1917 strain under simulated microgravity and normal gravity |
| GSE148719 |
RNA-seq expression analysis of E.coli in rich-M9 medium for HGT study |
| GSE149059 |
The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli |
| GSE149945 |
Enabling multiplexed CRISPR/Cas9 screening via massively parallel in-library ligation |
| GSE150240 |
The Fur Pan-regulon in E. coli shows diversity in strain-specific sets of target genes |
| GSE150501 |
Reconstruction of a Pan-regulon for Fur uncovers the conservation of its transcriptional regulation in E. coli |
| GSE153815 |
Global timeospatial map of RNA polymerase in Escherichia coli |
| GSE156143 |
Escherichia coli segments its controls on carbon-dependent gene expression into global and specific regulations |
| GSE157450 |
The RyfA small RNA serves as a master regulator of stress responses and virulence in uropathogenic Escherichia coli |
| GSE160082 |
Transcriptional responses of Escherichia coli to ceragenins and antimicrobial peptides |
| GSE160623 |
Bacterial ribosome pause sites surveyed by an integration of ribosome profiling and nascent chain profiling |
| GSE162595 |
Transcriptomic data of CRP(T168P) and AC(S254R) mutant strain of E. coli W |
| GSE162597 |
CRP(T168P) and AC(S254R) mutant strain of E. coli W |
| GSE174268 |
Inducible meiotic cDNA libraries for genome-wide studies of gene isoforms |
| GSE179963 |
Distribution of Holliday Junctions and Repair Forks during Escherichia coli DNA Double-Strand Break Repair |
| GSE181687 |
RNA-Seq of E. coli DY330 in different growth phases |
| GSE182531 |
Small RNA GcvB regulates oxidative stress response of Escherichia coli through its control of OxyR |
| GSE183061 |
Identification of collateral RNA cleavage mediated by Type VI CRISPR-Cas system from Leptotrichia shahiii |
| GSE183139 |
Analytical kinetic model of native tandem promoters in E. coli |
| GSE184331 |
Nascent polypeptide within the exit tunnel stabilizes the ribosome to counteract risky translation |
| GSE185757 |
The context of the ribosome binding site in mRNAs defines specificity of action of kasugamycin, an inhibitor of translation initiation |
| GSE196016 |
Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing |
| GSE219270 |
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness |
| GSE221155 |
Repairing growth of a genome-reduced strain using adaptive laboratory evolution and targeted gene knock-in |
| GSE221524 |
Periplasmic stress contributes to a tradeoff between protein secretion and cell growth in E. Coli Nissle |
| GSE223404 |
Bacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures |
| GSE224562 |
Genome-wide mapping of cleavage sites induced by topoisomerase IV in E. coli with a single-nucleotide resolution |
| GSE237609 |
Modifications in the T arm of tRNA globally determine tRNA function and cellular fitness |
| GSE242875 |
Adaptive laboratory evolution of E. coli ndh gene deletion strain |
| GSE244769 |
E. coli response to apoptotic epithelial cells [Doxo] |
| GSE244771 |
E. coli transcription in response to apoptotic metabolites [MeMix] |
| GSE244920 |
Host-microbe interactions and changes during intestinal epithelial cell death-dependent dysbiosis |
| GSE275261 |
Differential effects of inosine monophosphate dehydrogenase (IMPDH/GuaB) inhibition in Acinetobacter baumannii and Escherichia coli |
| GSE276379 |
Translational profiling of stress-induced small proteins uncovers a connection among distinct signaling systems |
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| Supplementary data files not provided |
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