GEO help: Mouse over screen elements for information.
Status
Public on Dec 21, 2015
Title
BovineHD BeadChip
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Bos taurus
Manufacturer
Illumina, Inc.
Manufacture protocol
See manufacturer's website
Description
777,000 SNPs
Submission date
Dec 21, 2015
Last update date
Dec 23, 2015
Organization
Illumina Inc.
E-mail(s)
expression@illumina.com, techsupport@illumina.com
Phone
1 800 809 4566
URL
http://www.illumina.com
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Samples (1819)
GSM1979842 , GSM1979843 , GSM1979844 , GSM1979845 , GSM1979846 , GSM1979847
GSM1979848 ,
GSM1979849 ,
GSM1979850 ,
GSM1979851 ,
GSM1979852 ,
GSM1979853 ,
GSM1979854 ,
GSM1979855 ,
GSM1979856 ,
GSM1979857 ,
GSM1979858 ,
GSM1979859 ,
GSM1979860 ,
GSM1979861 ,
GSM1979862 ,
GSM1979863 ,
GSM1979864 ,
GSM1979865 ,
GSM1979866 ,
GSM1979867 ,
GSM1979868 ,
GSM1979869 ,
GSM1979870 ,
GSM1979871 ,
GSM1979872 ,
GSM1979873 ,
GSM1979874 ,
GSM1979875 ,
GSM1979876 ,
GSM1979877 ,
GSM1979878 ,
GSM1979879 ,
GSM1979880 ,
GSM1979881 ,
GSM1979882 ,
GSM1979883 ,
GSM1979884 ,
GSM1979885 ,
GSM1979886 ,
GSM1979887 ,
GSM1979888 ,
GSM1979889 ,
GSM1979890 ,
GSM1979891 ,
GSM1979892 ,
GSM1979893 ,
GSM1979894 ,
GSM1979895 ,
GSM1979896 ,
GSM1979897 ,
GSM1979898 ,
GSM1979899 ,
GSM1979900 ,
GSM1979901 ,
GSM1979902 ,
GSM1979903 ,
GSM1979904 ,
GSM1979905 ,
GSM1979906 ,
GSM1979907 ,
GSM1979908 ,
GSM1979909 ,
GSM1979910 ,
GSM1979911 ,
GSM1979912 ,
GSM1979913 ,
GSM1979914 ,
GSM1979915 ,
GSM1979916 ,
GSM1979917 ,
GSM1979918 ,
GSM1979919 ,
GSM1979920 ,
GSM1979921 ,
GSM1979922 ,
GSM1979923 ,
GSM1979924 ,
GSM1979925 ,
GSM1979926 ,
GSM1979927 ,
GSM1979928 ,
GSM1979929 ,
GSM1979930 ,
GSM1979931 ,
GSM1979932 ,
GSM1979933 ,
GSM1979934 ,
GSM1979935 ,
GSM1979936 ,
GSM1979937 ,
GSM1979938 ,
GSM1979939 ,
GSM1979940 ,
GSM1979941 ,
GSM1979942 ,
GSM1979943 ,
GSM1979944 ,
GSM1979945 ,
GSM1979946 ,
GSM1979947 ,
GSM1979948 ,
GSM1979949 ,
GSM1979950 ,
GSM1979951 ,
GSM1979952 ,
GSM1979953 ,
GSM1979954 ,
GSM1979955 ,
GSM1979956 ,
GSM1979957 ,
GSM1979958 ,
GSM1979959 ,
GSM1979960 ,
GSM1979961 ,
GSM1979962 ,
GSM1979963 ,
GSM1979964 ,
GSM1979965 ,
GSM1979966 ,
GSM1979967 ,
GSM1979968 ,
GSM1979969 ,
GSM1979970 ,
GSM1979971 ,
GSM1979972 ,
GSM1979973 ,
GSM1979974 ,
GSM1979975 ,
GSM1979976 ,
GSM1979977 ,
GSM1979978 ,
GSM1979979 ,
GSM1979980 ,
GSM1979981 ,
GSM1979982 ,
GSM1979983 ,
GSM1979984 ,
GSM1979985 ,
GSM1979986 ,
GSM1979987 ,
GSM1979988 ,
GSM1979989 ,
GSM1979990 ,
GSM1979991 ,
GSM1979992 ,
GSM1979993 ,
GSM1979994 ,
GSM1979995 ,
GSM1979996 ,
GSM1979997 ,
GSM1979998 ,
GSM1979999 ,
GSM1980000 ,
GSM1980001 ,
GSM1980002 ,
GSM1980003 ,
GSM1980004 ,
GSM1980005 ,
GSM1980006 ,
GSM1980007 ,
GSM1980008 ,
GSM1980009 ,
GSM1980010 ,
GSM1980011 ,
GSM1980012 ,
GSM1980013 ,
GSM1980014 ,
GSM1980015 ,
GSM1980016 ,
GSM1980017 ,
GSM1980018 ,
GSM1980019 ,
GSM1980020 ,
GSM1980021 ,
GSM1980022 ,
GSM1980023 ,
GSM1980024 ,
GSM1980025 ,
GSM1980026 ,
GSM1980027 ,
GSM1980028 ,
GSM1980029 ,
GSM1980030 ,
GSM1980031 ,
GSM1980032 ,
GSM1980033 ,
GSM2507628 ,
GSM2507629 ,
GSM2507630 ,
GSM2507631 ,
GSM2507632 ,
GSM2507633 ,
GSM2507634 ,
GSM2507635 ,
GSM2507636 ,
GSM2507637 ,
GSM2507638 ,
GSM2507639 ,
GSM2507640 ,
GSM2507641 ,
GSM2507642 ,
GSM2507643 ,
GSM2507644 ,
GSM2507645 ,
GSM2507646 ,
GSM2507647 ,
GSM2507648 ,
GSM2507649 ,
GSM2507650 ,
GSM2507651 ,
GSM2507652 ,
GSM2507653 ,
GSM2507654 ,
GSM2507655 ,
GSM2507656 ,
GSM2507657 ,
GSM2507658 ,
GSM2507659 ,
GSM2507660 ,
GSM2507661 ,
GSM2507662 ,
GSM2507663 ,
GSM2507664 ,
GSM2507665 ,
GSM2507666 ,
GSM2507667 ,
GSM2507668 ,
GSM2507669 ,
GSM2507670 ,
GSM2507671 ,
GSM2507672 ,
GSM2507673 ,
GSM2507674 ,
GSM2507675 ,
GSM2507676 ,
GSM2507677 ,
GSM2507678 ,
GSM2507679 ,
GSM2507680 ,
GSM2507681 ,
GSM2507682 ,
GSM2507683 ,
GSM2507684 ,
GSM2507685 ,
GSM2507686 ,
GSM2507687 ,
GSM2507688 ,
GSM2507689 ,
GSM2507690 ,
GSM2507691 ,
GSM2507692 ,
GSM2507693 ,
GSM2507694 ,
GSM2507695 ,
GSM2507696 ,
GSM2507697 ,
GSM2507698 ,
GSM2507699 ,
GSM2507700 ,
GSM2507701 ,
GSM2507702 ,
GSM2507703 ,
GSM2507704 ,
GSM2507705 ,
GSM2507706 ,
GSM2507707 ,
GSM2507708 ,
GSM2507709 ,
GSM2507710 ,
GSM2507711 ,
GSM2507712 ,
GSM2507713 ,
GSM2507714 ,
GSM2507715 ,
GSM2507716 ,
GSM2507717 ,
GSM2507718 ,
GSM2507719 ,
GSM2507720 ,
GSM2507721 ,
GSM2507722 ,
GSM2507723 ,
GSM2507724 ,
GSM2507725 ,
GSM2507726 ,
GSM2507727 ,
GSM2507728 ,
GSM2507729 ,
GSM2507730 ,
GSM2507731 ,
GSM2507732 ,
GSM2507733 ,
GSM2507734 ,
GSM2507735 ,
GSM2507736 ,
GSM2507737 ,
GSM2507738 ,
GSM2507739 ,
GSM2507740 ,
GSM2507741 ,
GSM2507742 ,
GSM2507743 ,
GSM2507744 ,
GSM2507745 ,
GSM2507746 ,
GSM2507747 ,
GSM2507748 ,
GSM2507749 ,
GSM2507750 ,
GSM2507751 ,
GSM2507752 ,
GSM2507753 ,
GSM2507754 ,
GSM2507755 ,
GSM2507756 ,
GSM2507757 ,
GSM2507758 ,
GSM2507759 ,
GSM2507760 ,
GSM2507761 ,
GSM2507762 ,
GSM2507763 ,
GSM2507764 ,
GSM2507765 ,
GSM2507766 ,
GSM2507767 ,
GSM2507768 ,
GSM2507769 ,
GSM2507770 ,
GSM2507771 ,
GSM2507772 ,
GSM2507773 ,
GSM2507774 ,
GSM2507775 ,
GSM2507776 ,
GSM2507777 ,
GSM2507778 ,
GSM2507779 ,
GSM2507780 ,
GSM2507781 ,
GSM2507782 ,
GSM2507783 ,
GSM2507784 ,
GSM2507785 ,
GSM2507786 ,
GSM2507787 ,
GSM2507788 ,
GSM2507789 ,
GSM2507790 ,
GSM2507791 ,
GSM2507792 ,
GSM2507793 ,
GSM2507794 ,
GSM2507795 ,
GSM2507796 ,
GSM2507797 ,
GSM2507798 ,
GSM2507799 ,
GSM2507800 ,
GSM2507801 ,
GSM2507802 ,
GSM2507803 ,
GSM2507804 ,
GSM2507805 ,
GSM2507806 ,
GSM2507807 ,
GSM2507808 ,
GSM2507809 ,
GSM2507810 ,
GSM2507811 ,
GSM2507812 ,
GSM2507813 ,
GSM2507814 ,
GSM2507815 ,
GSM2507816 ,
GSM2507817 ,
GSM2507818 ,
GSM2507819 ,
GSM2507820 ,
GSM2507821 ,
GSM2507822 ,
GSM2507823 ,
GSM2507824 ,
GSM2507825 ,
GSM2507826 ,
GSM2507827 ,
GSM2507828 ,
GSM2507829 ,
GSM2507830 ,
GSM2507831 ,
GSM2507832 ,
GSM2507833 ,
GSM2507834 ,
GSM2507835 ,
GSM2507836 ,
GSM2507837 ,
GSM2507838 ,
GSM2507839 ,
GSM2507840 ,
GSM2507841 ,
GSM2507842 ,
GSM2507843 ,
GSM2507844 ,
GSM2507845 ,
GSM2507846 ,
GSM2507847 ,
GSM2507848 ,
GSM2507849 ,
GSM2507850 ,
GSM2507851 ,
GSM2507930 ,
GSM2507931 ,
GSM2507932 ,
GSM2507933 ,
GSM2507934 ,
GSM2507935 ,
GSM2507936 ,
GSM2507937 ,
GSM2507938 ,
GSM2507939 ,
GSM2507940 ,
GSM2507941 ,
GSM2648684 ,
GSM2648685 ,
GSM2648686 ,
GSM2648687 ,
GSM2648688 ,
GSM2648689 ,
GSM2648690 ,
GSM2648691 ,
GSM2648692 ,
GSM2648693 ,
GSM2648694 ,
GSM2648695 ,
GSM2648696 ,
GSM2648697 ,
GSM2648698 ,
GSM2648699 ,
GSM2648700 ,
GSM2648701 ,
GSM2648702 ,
GSM2648703 ,
GSM2648704 ,
GSM2648705 ,
GSM2648706 ,
GSM2648707 ,
GSM2648708 ,
GSM2648709 ,
GSM2648710 ,
GSM2648711 ,
GSM2648712 ,
GSM2648713 ,
GSM2648714 ,
GSM2648715 ,
GSM2648716 ,
GSM2648717 ,
GSM2648718 ,
GSM2648719 ,
GSM2648720 ,
GSM2648721 ,
GSM2648722 ,
GSM2648723 ,
GSM2648724 ,
GSM2648725 ,
GSM2648726 ,
GSM2648727 ,
GSM2648728 ,
GSM2648729 ,
GSM2648730 ,
GSM2648731 ,
GSM2648732 ,
GSM2648733 ,
GSM2648734 ,
GSM2648735 ,
GSM2648736 ,
GSM2648737 ,
GSM2648738 ,
GSM2648739 ,
GSM4222932 ,
GSM4222933 ,
GSM4222934 ,
GSM4222935 ,
GSM4222936 ,
GSM4222937 ,
GSM4222938 ,
GSM4222939 ,
GSM4222940 ,
GSM4222941 ,
GSM4222942 ,
GSM4222943 ,
GSM4222944 ,
GSM4222945 ,
GSM4222946 ,
GSM4222947 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (9)
GSE76305
Zygotes segregate entire parental genomes in distinct blastomere lineages causing cleavage stage chimaerism and mixolpoidy
GSE95358
In vitro procedures exacerbate chromosome instability in early cleavage stage embryos
GSE99620
Recombination map of male germline cell for a single Holstein bull
GSE142218
Population Structure, and Selection Signatures underlying High-Altitude Adaptation Inferred from Genome-Wide Copy Number Variations in Chinese Indigenous Cattle
GSE159157
Genome-wide association studies reveal susceptibility loci for digital dermatitis in Holstein cattle
GSE165945
Genome-wide association studies reveal susceptibility loci for noninfectious claw lesions in Holstein dairy cattle
GSE178156
Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing in bovine embryos
GSE182345
Multipolar zygotic divisions are characterized by parental genome segregation errors
GSE186266
Pleiotropic loci associated with foot disorders and common periparturient diseases in Holstein cattle
Data table header descriptions
ID
Illumina probe ID
SPOT_ID
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Data table
ID
SPOT_ID
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
ARS-BFGL-BAC-10172
ARS-BFGL-BAC-10172-0_T_F_1511662585
TOP
[A/G]
29744436
GGTCCCCAAAGTATGTGGTAGCACTTACTTATGTAAGTCATCACTCAAGT
3
14
6371334
ARS-BFGL-BAC-1020
ARS-BFGL-BAC-1020-0_B_R_1511662870
BOT
[T/C]
43711500
GGATTTTCTTCAATGTTGTTTCAGTGGCATCCTTTATTTGACTGGAATAG
3
14
7928189
ARS-BFGL-BAC-10245
ARS-BFGL-BAC-10245-0_B_F_1511658502
BOT
[T/C]
19677417
CGCCTTCTGTTTTTCTTCTTCTCTCTTCCTGTTCTCTTTCTCTCTGCCCT
3
14
31819743
ARS-BFGL-BAC-10345
ARS-BFGL-BAC-10345-0_T_F_1511662909
TOP
[A/C]
20791343
ACCATTCATTCTATTGCTTTGTGCTTCAAGTACTCCTGCAAATAAACCTA
3
14
6133529
ARS-BFGL-BAC-10365
ARS-BFGL-BAC-10365-0_T_R_1511658265
TOP
[A/C]
20611360
CAGACTCACAGCACTAATTTCTCATCTTCTCCCAGCCAATGTTTATTCTC
3
14
27005721
ARS-BFGL-BAC-10591
ARS-BFGL-BAC-10591-0_T_F_1511658099
TOP
[A/G]
72684366
AAAAAAGATGTTTATACAGTAATGCTTATTGTAGCACCATTTATAGTAGC
3
14
17544926
ARS-BFGL-BAC-10793
ARS-BFGL-BAC-10793-0_T_R_1511657669
TOP
[C/G]
38624429
CTACAAATATCAACATGCAGTATTTGTACCACACTTCACAGTGTTCATAC
25605392
CTACAAATATCAACATGCAGTATTTGTACCACACTTCACAGTGTTCATAG
3
14
29259114
ARS-BFGL-BAC-10867
ARS-BFGL-BAC-10867-0_B_F_1511658130
BOT
[G/C]
49662438
TAATATTTTTGATTGATTTATGCTGGAAATTTTCTCTTTGAAATGATCAG
13790385
TAATATTTTTGATTGATTTATGCTGGAAATTTTCTCTTTGAAATGATCAC
3
14
34639444
ARS-BFGL-BAC-10951
ARS-BFGL-BAC-10951-0_B_F_1511658476
BOT
[T/G]
24635507
CCCAGACAGCCACTCAGATGTGGGGGCTTTCCTGGCAGGACAGGTCTGTT
3
10
17911906
ARS-BFGL-BAC-10952
ARS-BFGL-BAC-10952-0_T_F_1511658173
TOP
[A/G]
21728440
CGCTCCTCACTCAAAACAGGCTATTTTAAGCAAATATTCTTTGGTCTATC
3
10
18882288
ARS-BFGL-BAC-10960
ARS-BFGL-BAC-10960-0_T_F_1511657561
TOP
[A/G]
38785342
GTCTGAAAACTCCCGAAAACTCGGGCGCTCTCCCCGCCCCTCCAGCCCTG
3
10
20609250
ARS-BFGL-BAC-10972
ARS-BFGL-BAC-10972-0_B_F_1511657864
BOT
[G/C]
56699377
TAGGCCTCTCAGACCTGGATCTAAATTACTTCTCCAGGTACATTCCCCTG
65628329
TAGGCCTCTCAGACCTGGATCTAAATTACTTCTCCAGGTACATTCCCCTC
3
10
20792754
ARS-BFGL-BAC-10975
ARS-BFGL-BAC-10975-0_T_F_1511662923
TOP
[A/G]
54806317
TGAGTTGCTATTGAGGCATCCTCTGTCTTCCTAGCGCCTGAGTGCCCTTC
3
10
21225382
ARS-BFGL-BAC-11000
ARS-BFGL-BAC-11000-0_B_F_1511663020
BOT
[T/G]
59609403
TAAGTATAACTTAACTGTGAAATGTACAATCACCACATTGAAATCTGAGC
3
10
79252023
ARS-BFGL-BAC-11003
ARS-BFGL-BAC-11003-0_B_F_1511658066
BOT
[T/C]
21785433
AAATTCTTAAAGAAATGCCCTCACACTGGGGACGCTGACTGACTGAAATA
3
10
80410977
ARS-BFGL-BAC-11007
ARS-BFGL-BAC-11007-0_B_F_1511658026
BOT
[T/C]
50804399
GAGGCATCTAACATGACCAGTCTATTCACTCTCCAGGGTTGACATTTTCC
3
10
80783719
ARS-BFGL-BAC-11025
ARS-BFGL-BAC-11025-0_B_F_1511663050
BOT
[T/G]
21698460
CCAAAAACAAGTCTCCATAAGTATTCATTAGAAAATACTTTGGCTCAAAT
3
10
84516867
ARS-BFGL-BAC-11028
ARS-BFGL-BAC-11028-0_T_F_1511657863
TOP
[A/G]
72685364
CAATAGGTCAGTGCTTTTCACATAAAACAGAAAAGCATATCTTAAGAATC
3
10
85649939
ARS-BFGL-BAC-11034
ARS-BFGL-BAC-11034-0_T_R_1511658401
TOP
[A/G]
33672481
ACACACAGACAGGTCATGACCACAGTGACCACTGGGTTTTCTGGTAAAAA
3
1
12839893
ARS-BFGL-BAC-11044
ARS-BFGL-BAC-11044-0_B_F_1511657582
BOT
[T/C]
15694379
AGTGCTCCTTAGTCTCCATGGTACAGTTTACACAGTGGAAAAATATGATT
3
1
12805406
Total number of rows: 777962 Table truncated, full table size 106824 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL21267_bovinehd-manifest-b.csv.gz
77.0 Mb
(ftp) (http)
CSV