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Status
Public on May 24, 2005
Title
[Bovine] Affymetrix Bovine Genome Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Bos taurus Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=bovine http://www.affymetrix.com/analysis/index.affx Submission date
May 23, 2005
Last update date
Dec 17, 2012
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (2304)
GSM52151 , GSM52152 , GSM77670 , GSM77671 , GSM77672 , GSM77673
GSM77674 ,
GSM77675 ,
GSM77676 ,
GSM77677 ,
GSM77678 ,
GSM77679 ,
GSM77680 ,
GSM77681 ,
GSM77682 ,
GSM77683 ,
GSM77684 ,
GSM77685 ,
GSM77686 ,
GSM77687 ,
GSM117016 ,
GSM117017 ,
GSM117018 ,
GSM117019 ,
GSM117020 ,
GSM117021 ,
GSM117022 ,
GSM117023 ,
GSM117024 ,
GSM117025 ,
GSM117026 ,
GSM117027 ,
GSM138455 ,
GSM138456 ,
GSM138457 ,
GSM138458 ,
GSM138459 ,
GSM138460 ,
GSM138461 ,
GSM138462 ,
GSM138463 ,
GSM138464 ,
GSM138465 ,
GSM138466 ,
GSM138467 ,
GSM138468 ,
GSM138469 ,
GSM138470 ,
GSM138471 ,
GSM138472 ,
GSM138474 ,
GSM138475 ,
GSM138476 ,
GSM138477 ,
GSM138478 ,
GSM138479 ,
GSM138644 ,
GSM138649 ,
GSM138654 ,
GSM138655 ,
GSM138657 ,
GSM138660 ,
GSM159397 ,
GSM159398 ,
GSM159399 ,
GSM159400 ,
GSM159401 ,
GSM159402 ,
GSM177206 ,
GSM177207 ,
GSM177208 ,
GSM177209 ,
GSM177210 ,
GSM177211 ,
GSM209803 ,
GSM209804 ,
GSM234933 ,
GSM234934 ,
GSM234935 ,
GSM234936 ,
GSM234937 ,
GSM234938 ,
GSM234939 ,
GSM234940 ,
GSM234941 ,
GSM234942 ,
GSM238331 ,
GSM238332 ,
GSM238333 ,
GSM238334 ,
GSM238335 ,
GSM238336 ,
GSM238337 ,
GSM270488 ,
GSM270489 ,
GSM270490 ,
GSM270491 ,
GSM270492 ,
GSM270493 ,
GSM270494 ,
GSM270495 ,
GSM270496 ,
GSM270497 ,
GSM270498 ,
GSM270499 ,
GSM270500 ,
GSM270501 ,
GSM270502 ,
GSM270503 ,
GSM270504 ,
GSM270505 ,
GSM270506 ,
GSM270507 ,
GSM270508 ,
GSM270509 ,
GSM270510 ,
GSM270511 ,
GSM270512 ,
GSM270513 ,
GSM270514 ,
GSM270515 ,
GSM270516 ,
GSM270517 ,
GSM270518 ,
GSM270519 ,
GSM270520 ,
GSM270521 ,
GSM270522 ,
GSM270523 ,
GSM285799 ,
GSM285808 ,
GSM285812 ,
GSM285814 ,
GSM285815 ,
GSM285818 ,
GSM285824 ,
GSM285827 ,
GSM285831 ,
GSM289423 ,
GSM289424 ,
GSM289425 ,
GSM289426 ,
GSM289427 ,
GSM289428 ,
GSM289429 ,
GSM289430 ,
GSM289431 ,
GSM289432 ,
GSM289433 ,
GSM289434 ,
GSM298143 ,
GSM298144 ,
GSM298145 ,
GSM298146 ,
GSM298147 ,
GSM298148 ,
GSM298149 ,
GSM298150 ,
GSM298151 ,
GSM298152 ,
GSM298153 ,
GSM298154 ,
GSM298155 ,
GSM298156 ,
GSM298157 ,
GSM298158 ,
GSM298159 ,
GSM298160 ,
GSM298161 ,
GSM298162 ,
GSM298163 ,
GSM298164 ,
GSM298165 ,
GSM298166 ,
GSM298167 ,
GSM298168 ,
GSM298169 ,
GSM298170 ,
GSM298171 ,
GSM298172 ,
GSM298173 ,
GSM298174 ,
GSM298175 ,
GSM298176 ,
GSM298177 ,
GSM298178 ,
GSM298179 ,
GSM298180 ,
GSM298181 ,
GSM298182 ,
GSM298183 ,
GSM298184 ,
GSM298185 ,
GSM298186 ,
GSM299015 ,
GSM299016 ,
GSM299017 ,
GSM299018 ,
GSM299019 ,
GSM299020 ,
GSM299021 ,
GSM299022 ,
GSM299023 ,
GSM299024 ,
GSM299025 ,
GSM299026 ,
GSM299027 ,
GSM299028 ,
GSM299029 ,
GSM299030 ,
GSM299031 ,
GSM299032 ,
GSM309704 ,
GSM309705 ,
GSM309706 ,
GSM309707 ,
GSM309708 ,
GSM309709 ,
GSM309710 ,
GSM309711 ,
GSM309712 ,
GSM309713 ,
GSM309714 ,
GSM309715 ,
GSM309716 ,
GSM309717 ,
GSM309718 ,
GSM309719 ,
GSM309720 ,
GSM309721 ,
GSM309722 ,
GSM309723 ,
GSM309724 ,
GSM309725 ,
GSM309726 ,
GSM318559 ,
GSM318560 ,
GSM318561 ,
GSM318562 ,
GSM318563 ,
GSM318564 ,
GSM318565 ,
GSM318566 ,
GSM318567 ,
GSM318568 ,
GSM318569 ,
GSM318570 ,
GSM318571 ,
GSM318572 ,
GSM318573 ,
GSM318574 ,
GSM318575 ,
GSM318576 ,
GSM323508 ,
GSM323509 ,
GSM323510 ,
GSM323511 ,
GSM323512 ,
GSM323513 ,
GSM323514 ,
GSM323515 ,
GSM323516 ,
GSM323517 ,
GSM323518 ,
GSM323519 ,
GSM323520 ,
GSM323521 ,
GSM323522 ,
GSM336317 ,
GSM336318 ,
GSM336319 ,
GSM336320 ,
GSM336321 ,
GSM336322 ,
GSM336323 ,
GSM336324 ,
GSM336325 ,
GSM336327 ,
GSM336328 ,
GSM336329 ,
GSM336330 ,
GSM344963 ,
GSM344964 ,
GSM344965 ,
GSM344966 ,
GSM344967 ,
GSM344968 ,
GSM348251 ,
GSM348252 ,
GSM348253 ,
GSM348254 ,
GSM348255 ,
GSM348256 ,
GSM348257 ,
GSM348258 ,
GSM348259 ,
GSM363864 ,
GSM363865 ,
GSM363866 ,
GSM363867 ,
GSM363868 ,
GSM363869 ,
GSM363870 ,
GSM363871 ,
GSM363872 ,
GSM363873 ,
GSM363874 ,
GSM363875 ,
GSM363876 ,
GSM363877 ,
GSM363878 ,
GSM375558 ,
GSM375559 ,
GSM375560 ,
GSM375561 ,
GSM375562 ,
GSM375563 ,
GSM375564 ,
GSM375565 ,
GSM375566 ,
GSM375567 ,
GSM375569 ,
GSM375570 ,
GSM375571 ,
GSM375572 ,
GSM375573 ,
GSM375574 ,
GSM375575 ,
GSM375576 ,
GSM375577 ,
GSM375578 ,
GSM375579 ,
GSM375580 ,
GSM375581 ,
GSM375582 ,
GSM375583 ,
GSM375584 ,
GSM375585 ,
GSM375586 ,
GSM375587 ,
GSM375588 ,
GSM385316 ,
GSM385317 ,
GSM385318 ,
GSM385319 ,
GSM385320 ,
GSM385321 ,
GSM385322 ,
GSM385323 ,
GSM385324 ,
GSM385325 ,
GSM385326 ,
GSM385327 ,
GSM389356 ,
GSM389357 ,
GSM389358 ,
GSM389359 ,
GSM389360 ,
GSM389361 ,
GSM389362 ,
GSM389363 ,
GSM389364 ,
GSM389365 ,
GSM389366 ,
GSM423089 ,
GSM423090 ,
GSM423091 ,
GSM423092 ,
GSM423093 ,
GSM423094 ,
GSM423095 ,
GSM423096 ,
GSM423097 ,
GSM423098 ,
GSM423099 ,
GSM423100 ,
GSM445791 ,
GSM445792 ,
GSM445793 ,
GSM445794 ,
GSM445795 ,
GSM445796 ,
GSM445797 ,
GSM445798 ,
GSM445799 ,
GSM445800 ,
GSM445801 ,
GSM445802 ,
GSM447750 ,
GSM447751 ,
GSM447752 ,
GSM447753 ,
GSM447754 ,
GSM447755 ,
GSM447756 ,
GSM447757 ,
GSM447758 ,
GSM447759 ,
GSM447760 ,
GSM447761 ,
GSM447762 ,
GSM447763 ,
GSM447764 ,
GSM447765 ,
GSM447766 ,
GSM447767 ,
GSM456627 ,
GSM456628 ,
GSM456629 ,
GSM456630 ,
GSM456631 ,
GSM456632 ,
GSM456633 ,
GSM456634 ,
GSM456635 ,
GSM456636 ,
GSM456637 ,
GSM456638 ,
GSM456639 ,
GSM456640 ,
GSM456641 ,
GSM456642 ,
GSM458775 ,
GSM458777 ,
GSM458778 ,
GSM458779 ,
GSM458780 ,
GSM458781 ,
GSM458783 ,
GSM458784 ,
GSM458785 ,
GSM465414 ,
GSM465415 ,
GSM465416 ,
GSM465417 ,
GSM465418 ,
GSM465419 ,
GSM465420 ,
GSM465421 ,
GSM465422 ,
GSM465423 ,
GSM465424 ,
GSM465425 ,
GSM465809 ,
GSM465810 ,
GSM465811 ,
GSM465812 ,
GSM465813 ,
GSM465814 ,
GSM465815 ,
GSM465816 ,
GSM465817 ,
GSM465818 ,
GSM465819 ,
GSM465820 ,
GSM467926 ,
GSM467927 ,
GSM467928 ,
GSM467929 ,
GSM467930 ,
GSM467931 ,
GSM482785 ,
GSM482786 ,
GSM482787 ,
GSM482788 ,
GSM488096 ,
GSM488097 ,
GSM488098 ,
GSM488099 ,
GSM488100 ,
GSM488101 ,
GSM488102 ,
GSM488103 ,
GSM488104 ,
GSM488105 ,
GSM488106 ,
GSM488107 ,
GSM488108 ,
GSM488109 ,
GSM488110 ,
GSM491592 ,
GSM491593 ,
GSM491594 ,
GSM491595 ,
GSM491596 ,
GSM491597 ,
GSM491598 ,
GSM491599 ,
GSM491600 ,
GSM491601 ,
GSM491602 ,
GSM491603 ,
GSM491604 ,
GSM491605 ,
GSM491606 ,
GSM491607 ,
GSM491608 ,
GSM491609 ,
GSM502558 ,
GSM502559 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (134)
GSE2704 Comparison of bovine gd and ab T cell clones
GSE3439 Profiling of mucosal derived bovine ab and gd T cells during Salmonella enterica serovar typhimurium enterocolitis
GSE5195 Analysis of gene expression during the onset of muscle hypertrophy in callipyge lambs: time course
GSE5955 Expression data from Callipyge muscle types (ST, LD, SS, SM) at birth (T=0) and 12 weeks (T=12)
GSE5970 Bovine testis gene expression profile at 2, 4 and 8 week of age
GSE6918 The distinct response of gd T cells to the Nod2 agonist muramyl dipeptide
GSE7360 Equine Laminitis vs Control.
GSE8442 Profiling of Angiotensin II Rapid Response Genes in Human, Bovine, and Rat Adrenocortical Cells.
GSE9256 Transcriptomes from Longissimus dorsi samples of Korean Native Cattle (Hanwoo)
GSE9344 Gene expression in bovine mammary gland in response to increased milking frequency as determined by microarray and SAGE
GSE10695 Gene expression profiling of liver from dairy cows subjected to intra-mammary LPS treatment: time course
GSE11312 Gene expression profiling of the periovulatory follicle
GSE11495 Regulation of granulosa and theca cell transcriptomes during ovarian antral follicle development.
GSE11780 Muscle gene expression of lambs with maternal callipyge allele
GSE11835 Gene expression data in heifers with persistently infected (PI) or transiently infected (TI) fetuses.
GSE12327 Expression profiling reveals distinct clusters of transcriptional regulation during bovine preimplantation in vivo
GSE12688 Expression profiling of prion accumulating ovine microglia
GSE12901 Expression data from early Bovine embryo
GSE13320 Changes in gene expression in gamma delta T cells induced by Yamoa
GSE13321 Changes in gene expression induced by apple polyphenol (APP)
GSE13725 Peripheral WBC from Brahman and Holstein-Friesian cattle infested with the cattle tick Rhipicephalus microplus
GSE13852 Expression profiling of Bos taurus lymph nodes upon infection with Ovine Herpesvirus 2
GSE13854 Expression profiling of the host and the Ovine Herpesvirus 2 pathogen during malignant catarrhal fever of cattle
GSE14546 Effect of PPARγ inhibition on pulmonary endothelial cell gene expression: Gene profiling in pulmonary hypertension
GSE15019 Transcriptome analysis of bovine mammary gland tissue treated with E. coli for 6 hours
GSE15020 Transcriptome analysis of bovine mammary gland tissue treated with E. coli for 24 hours
GSE15022 Transcriptome analysis of bovine mammary gland tissue of an udder quarter adjacent to an E.coli treated one for 24 hrs
GSE15025 E. coli infection induces distinct local and systemic transcriptome responses in the mammary gland
GSE15342 Microarray analysis of gene expression in the skin of tick-naïve and tick-infested Holstein-Friesian and Brahman cattle
GSE15544 Expression data from uterine endometrial tissues of Holstein-Friesian cows on days 14-16 after calving
GSE16880 Actions and interactions of progesterone and estrogen on transcriptome profiles of the bovine endometrium
GSE17849 Effect of Dietary Grain on Rumen Papillae Gene Expression in Holstein Dairy Cows
GSE17921 Sex-related transcriptional differences in Day 7 bovine in vitro produced blastocysts
GSE18290 Time course expression data from early Bovine embryo, Human embryo, and Mouse embryo
GSE18394 Comparison of bovine undifferentiated MSCs, chondrogenic MSCs and chondrocytes in 3D culture
GSE18738 Bovine Hypertrophic Growth Plate Chondrocytes vs. Reserve Zone Chondrocytes
GSE18768 Transcriptome analysis of epithelial and stromal contributions to mammogenesis in prepartum dry cows
GSE18879 Effects of dynamic compressive loading on MSC chondrogenesis
GSE19415 Expression data from primary ovine fetal turbinate cells infected with Orf Virus IA82 and deletion mutant OV-IA82Δ024
GSE19586 Expression data from the longuissimus dorsi muscle of Qinchuan cattle, Qinghai yak and Guangxi buffalo at 36 months
GSE19696 Effect of Dietary Supplementation of Selenium (Organic vs. Inorganic) on Liver Gene Expression Profile in Beef Heifers
GSE20112 Expression data from Sheep longissimus dorsi (LD) muscle during development
GSE20552 Sheep longissimus dorsi (LD) muscle from 40 individual progeny belonging to six Poll Dorset industry sires
GSE20974 Bovine pre-transfer endometrium and embryo transcriptome fingerprints as predictors of pregnancy success after embryo transfer (endometrial study)
GSE21005 Expression data from different stages and types of oocytes and cumulus cells (CCs)
GSE21030 Expression data from early preimplantation Bovine embryos
GSE21049 Bovine pre-transfer endometrium and embryo transcriptome fingerprints as predictors of pregnancy success after embryo transfer
GSE21535 Effect of lactation on transcriptomic expression in bovine adipose tissue
GSE21782 Microarray Analysis on the Differences of Gene Expression in Longissimus Dorsi Muscle Tissue between 1-month and 24-month Chinese Red Steppes
GSE21967 Characterization of pathogen specific expression of host immune response genes in Mycobacterium and Anaplasma spp. infection in ruminants
GSE22590 Delineating the angiogenic gene expression profile prior to pulmonary vascular remodeling in a lamb model of congenital heart disease
GSE23348 Prostaglandin F2α -induced changes in transcriptome of bovine mid cycle versus early corpus luteum
GSE23449 Gene Expression Profiles in Immature and In vitro matured bovine Oocytes
GSE23894 Hepatic Gene Expression Profiles of Growing Beef Steers Grazing High vs. Low Endophyte-Infected Tall Fescue Grass
GSE24070 PACAP and TNF regulate discrete population of genes in bovine chromaffin cells
GSE24217 Gene-expression profile of the response to E. coli (k2bh2) infection in the bovine udder
GSE24477 Gene expression Difference in oocytes derived from adult and prepubertal Cattle
GSE24560 Comparative Expression Profiling of E. coli and S. aureus inoculated primary Mammary Gland Cells sampled from Cows with different genetic Predisposition for Somatic Cell Score
GSE24596 Gene Expression profile in preimplantation in vitro embryos derived from Prepubertal heifers and Adult Cattle
GSE24936 Transcriptomic profiling of bovine IVF embryos revealed candidate genes and pathways involved in early embryonic development
GSE25319 Gene transcription profiles showing early systemic response to E. coli (k2bh2) infection in bovine liver
GSE25413 Expression data from primary bovine mammary epithelial cells (pbMEC) challenged with heat inactivated E. coli and S. aureus particles
GSE25652 Development of Laser Capture Microdissection to study the gene expression of the sheep early ovarian folliculogenesis
GSE27380 The acute milk yield response to frequent milking in early lactation is mediated by genes transiently regulated by milk removal.
GSE27817 Transcriptome changes at the initiation of elongation in the bovine conceptus
GSE27840 The effect of milk accumulation on gene expression in bovine mammary gland
GSE27851 The persistent milk yield response to frequent milking during early lactation is associated with persistent changes in mammary gene expression
GSE27961 Global changes in gene expression of buffalo cow corpus luteum during prostaglandin F2alpha- induced luteolysis
GSE29233 Genes regulated by TGF-beta in bovine articular chondrocytes
GSE29376 Endothelial Cells Express a Unique Transcriptional Profile under Very High Wall Shear Stress Known to Induce Expansive Arterial Remodeling
GSE29737 Gene expression profiles in skin biopsies of Red Deer Cervus elaphus experimentally infected with Bluetongue virus
GSE30694 Comparison of the effects of early pregnancy with human interferon, alpha 2 (IFNA2) on gene expression in bovine endometrium
GSE32186 Expression data from primary bovine mammary epithelial cells (pbMEC) primed with 100 ng/ml LPS and subsequently challenged with heat inactivated E. coli particles after a short or long waiting period
GSE32305 Establishing a set of genes differentially expressed in benign versus malignant adrenocortical cells
GSE33030 Effects of pregnancy and progesterone supplementation on endometrial gene expression in cattle
GSE33309 Global gene expression of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis
GSE33359 Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis
GSE33496 Transcriptional response of endometrium and the bovine preimplantative embryo to subclinical inflamation of the uterine environment
GSE33720 Pleiotropic effects of the gene diacylglycerol-O-transferase 1 (DGAT1) polymorphism in the mammary gland tissue of dairy cows
GSE35185 Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis
GSE35612 Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (acute phase)
GSE35613 Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (chronic 1 phase)
GSE35614 Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (chronic 2 phase)
GSE35615 Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis
GSE36079 Transcription profile of the bovine pretransfer endometrium based on pregnancy success after in vitro produced embryos transfer
GSE36080 Transcription profile of the bovine pretransfer endometrium based on pregnancy success after in vivo produced embryos transfer
GSE37127 Positive and Negative Spatial Gradients of High Wall Shear Stress Have Different Effects on Endothelial Gene Expression
GSE37844 Expression data from bovine corpus luteum treated with equine chorionic gonadotropin (eCG)
GSE38512 Placental gene expression in pregnancies established after the transfer of day 7 blastocysts derived from in vitro (IVP), somatic cell nuclear transfer (SCNT) and in vivo (AI) embryos
GSE39006 Transcriptional response of adipose tissue depots to a high energy feeding regimen in Japanese Black and Holstein steers
GSE39589 Gene expression in bovine ovarian follicle granulosa
GSE39796 Bovine cartilage zone arrays
GSE39797 Cartilage zone arrays
GSE39819 Transcriptional response of bovine macrophages after infection with two Argentinean Mycobacterium bovis isolates
GSE40101 Gene expression analysis of bovine day 16 embryos obtained from SCNT and IVP pregnancies
GSE42535 Gene expression in cultured bovine ovarian granulosa
GSE42838 Mammalian fetal ovary development
GSE42932 TGF-beta 1 effect on primary bovine aortic endothelial cells
GSE44704 Expression data from bovine ovarian theca cells in primary culture
GSE45857 Expression data from bovine liver
GSE46996 The pre-ovulatory LH surge elicits different effects on the granulosa- and theca-specific expression profiles in bovine follicles
GSE47776 Pregnancy-associated genes contribute to antiluteolytic mechanisms in ovine coprus luteum
GSE48916 Evidence that variation in adult body size among mammalian species is achieved by modulating the pace of a growth-regulating genetic program
GSE49505 Gene expression in bovine ovarian follicle theca interna
GSE49992 Gene expression profiling of longissimus dorsi muscle,subcutaneous and abdominal adipose tissues in Yan yellow cattle
GSE50685 Impact of intramammary treatment on gene expression profiles of bovine mammary gland tissue after challenge with E. coli
GSE52145 A comparision of the transcriptional profiles of the Muscle from cattle raised outdoors on pasture versus indoors on high dietary supplement
GSE53457 Influence of lysophosphatidic acid (LPA) and LPA together with interferon tau (IFNt) on transcriptional profiling of bovine endometrial cells.
GSE57907 Expression data from skin of bovines infested with ticks
GSE58148 Expression data from Sheep kidney fat (KF) in lambs at 12 weeks of age; comparison of two genotypes, Callipyge (NCpat (CN)) and wild type (NN)
GSE59485 Expression data from bovine nucleus pulposus interverteral disc cells
GSE59774 Key hub and bottleneck genes differentiate the macrophage response to virulent and attenuated Mycobacterium bovis
GSE64578 Comparative analysis of ovine fetal skeletal muscle gene expression: control and intrauterine growth restriction (IUGR)
GSE65059 Effect of photoperiod during late gestation on bovine mammary trancriptome
GSE65269 Expression data from bovine oocyte; Identification of molecular markers for oocyte competence in bovine cummulus cells
GSE69048 Whole blood gene expression profiling in preclinical and clinical cattle infected with atypical bovine spongiform encephalopathy.
GSE69094 Changes in the transcriptome of bovine ovarian cortex during follicle activation in vitro
GSE74987 Endometrial transcriptome profile of cows affected by subclinical or clinical endometritis
GSE75347 Comparative analysis of Musculus longissimus dorsi expression of Holstein x Charolais F2 cattle (SEGFAM) with high and low intramuscular fat (IMF) content
GSE75348 Transcriptional response of muscle tissue to a high energy feeding regimen in Japanese Black and Holstein steers
GSE75750 Expression data from Day 15 bovine conceptuses
GSE79827 Expression data from cold stress in Sanhe cattle
GSE85901 Interleukin-6 mediated signaling in adrenal medullary chromaffin cells
GSE87391 Transcript profiling in the liver of early-lactating dairy cows fed conjugated linoleic acid
GSE89279 Expression data from somatic cell nuclear transfer bovine embryo
GSE93082 Expression and differential expression analysis of milk samples from healthy and diseased diary cows.
GSE94794 Transcriptome analysis of the endometrium, placenta, and liver in lactating and non-lactating dairy cows
GSE94886 Expression data from muscle of vitamin A restricted steer.
GSE97437 Expression data from periparturient bos taurus
GSE99654 Expression data from bovine conceptus during peri-implantation period
GSE114384 Expression data of sheep exposed to Mycobacterium avium subsp. Paratuberculosis
GSE114580 Hepatic gene expression in growth restricted fetal sheep after an acute hyperinsulinemic clamp or saline infusion at 0.9 gestation
GSE148323 Attenuated lymphocyte activation leads to the development of immunotolerance on bovine fetuses persistently infected with BVDV
GSE217438 Hypoxia-induced pulmonary hypertension in calf right ventricle
Relations Alternative to
GPL10186 (Alternative CDF)Alternative to
GPL10941 (Alternative CDF)Alternative to
GPL13706 (Alternative CDF)
Data table header descriptions ID Affymetrix Probe Set ID
Species Scientific Name The genus and species of the organism represented by the probe set.
GB_ACC GenBank Accession Number
SPOT_ID spot identifier
GI GenBank GI Number
UniGene ID UniGene accession number.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source The database from which the sequence used to design this probe set was taken.
Transcript ID(Array Design) Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Archival UniGene Cluster UniGene cluster ID, curated at the time of array design, of the group of sequences used to build the consensus sequence.
Chromosomal Location Chromosomal location. We add the prefix "Chr:" to avoid problems with some spreadsheet applications interpreting some locations as Dates.
Unigene Cluster Type ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Protein ID ID of the protein sequence in the NCBI RefSeq database.
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Annotation Description Annotation description
Data table ID Species Scientific Name GB_ACC SPOT_ID GI UniGene ID Gene Title Gene Symbol Annotation Date Sequence Type Sequence Source Transcript ID(Array Design) Target Description Representative Public ID Archival UniGene Cluster Chromosomal Location Unigene Cluster Type ENTREZ_GENE_ID RefSeq Protein ID RefSeq Transcript ID Annotation Description AFFX-BioB-3_at Bos taurus
J04423.1 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AFFX-Ec-bioB
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioB-3
This probe set was annotated using the Matching Probes based pipeline to a Blattner identifier using 1 transcripts. // false // Matching Probes // A
AFFX-BioB-5_at Bos taurus
J04423.1 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AFFX-Ec-bioB
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioB-5
This probe set was annotated using the Matching Probes based pipeline to a Blattner identifier using 1 transcripts. // false // Matching Probes // A
AFFX-BioB-M_at Bos taurus
J04423.1 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AFFX-Ec-bioB
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioB-M
This probe set was annotated using the Matching Probes based pipeline to a Blattner identifier using 1 transcripts. // false // Matching Probes // A
AFFX-BioC-3_at Bos taurus
J04423.1 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AFFX-Ec-bioC
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioC-3
This probe set was annotated using the Matching Probes based pipeline to a Blattner identifier using 1 transcripts. // false // Matching Probes // A
AFFX-BioC-5_at Bos taurus
J04423.1 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AFFX-Ec-bioC
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioC-5
This probe set was annotated using the Matching Probes based pipeline to a Blattner identifier using 1 transcripts. // false // Matching Probes // A
AFFX-BioDn-3_at Bos taurus
J04423.1 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AFFX-Ec-bioD
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioDn-3
This probe set was annotated using the Matching Probes based pipeline to a Blattner identifier using 1 transcripts. // false // Matching Probes // A
AFFX-BioDn-5_at Bos taurus
J04423.1 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AFFX-Ec-bioD
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioDn-5
This probe set was annotated using the Matching Probes based pipeline to a Blattner identifier using 1 transcripts. // false // Matching Probes // A
AFFX-Bt-A00196-1_s_at Bos taurus
A00196 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
A00196-1
CONTROL A00196 /FEA=CDS /DB_XREF=CAA00038.1 GI:14446 REMTREMBL:CAA00038 /PROD=beta glucuronidase /GEN=uidA
AFFX-Bt-A00196-1
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AB076373-1_at Bos taurus
AB076373 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AB076373-1
CONTROL AB076373 /FEA=CDS_1 /DB_XREF=BAC00955.1 GI:21623749 /PROD=thiazole synthase /GEN=ptrA
AFFX-Bt-AB076373-1
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-actin-3_at Bos taurus
NM_174225.1 8435
actin, alpha 1, skeletal muscle
ACTA1
31-Mar-05
Consensus sequence
GenBank
Bt.8435.1
CONTROL gb:NM_174225.1 /DB_XREF=gi:27819613 /GEN=ACTA1 /TID=Bt.8435.1 /CNT=266 /FEA=FLmRNA /TIER=FL+Stack /STK=23 /LL=281592 /UG=Bt.8435 /DEF=Bos taurus actin, alpha 1, skeletal muscle (ACTA1), mRNA. /PROD=actin, alpha 1, skeletal muscle /FL=gb:NM_174225.1
NM_174225.1
Bt.8435
281592 NP_776650.1
NM_174225
This probe set was annotated using the Matching Probes based pipeline to a Locus Link identifier using 1 transcripts. // false // Matching Probes // A
AFFX-Bt-actin-5_at Bos taurus
NM_174225.1 8435
actin, alpha 1, skeletal muscle
ACTA1
31-Mar-05
Consensus sequence
GenBank
Bt.8435.1
CONTROL gb:NM_174225.1 /DB_XREF=gi:27819613 /GEN=ACTA1 /TID=Bt.8435.1 /CNT=266 /FEA=FLmRNA /TIER=FL+Stack /STK=23 /LL=281592 /UG=Bt.8435 /DEF=Bos taurus actin, alpha 1, skeletal muscle (ACTA1), mRNA. /PROD=actin, alpha 1, skeletal muscle /FL=gb:NM_174225.1
NM_174225.1
Bt.8435
281592 NP_776650.1
NM_174225
This probe set was annotated using the Matching Probes based pipeline to a Locus Link identifier using 1 transcripts. // false // Matching Probes // A
AFFX-Bt-actin-M_at Bos taurus
NM_174225.1 8435
actin, alpha 1, skeletal muscle
ACTA1
31-Mar-05
Consensus sequence
GenBank
Bt.8435.1
CONTROL gb:NM_174225.1 /DB_XREF=gi:27819613 /GEN=ACTA1 /TID=Bt.8435.1 /CNT=266 /FEA=FLmRNA /TIER=FL+Stack /STK=23 /LL=281592 /UG=Bt.8435 /DEF=Bos taurus actin, alpha 1, skeletal muscle (ACTA1), mRNA. /PROD=actin, alpha 1, skeletal muscle /FL=gb:NM_174225.1
NM_174225.1
Bt.8435
281592 NP_776650.1
NM_174225
This probe set was annotated using the Matching Probes based pipeline to a Locus Link identifier using 1 transcripts. // false // Matching Probes // A
AFFX-Bt-AF292559-1_at Bos taurus
AF292559 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AF292559-1
CONTROL AF292559 /FEA=CDS_1 /DB_XREF=AAG34044.1 GI:11321077 /PROD=yellow fluorescent protein yfp /GEN=yfp
AFFX-Bt-AF292559-1
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AF292559-2_s_at Bos taurus
AF292559 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AF292559-2
CONTROL AF292559 /FEA=CDS_2 /DB_XREF=AAG34045.1 GI:11321078 /PROD=mob /GEN=mob
AFFX-Bt-AF292559-2
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AF292559-3_s_at Bos taurus
AF292559 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AF292559-3
CONTROL AF292559 /FEA=CDS_3 /DB_XREF=AAG34046.1 GI:11321079 /PROD=repB /GEN=repB
AFFX-Bt-AF292559-3
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AF292559-4_s_at Bos taurus
AF292559 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AF292559-4
CONTROL AF292559 /FEA=CDS_4 /DB_XREF=AAG34047.1 GI:11321080 /PROD=kanamycin resistance protein /GEN=aphA
AFFX-Bt-AF292559-4
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AF292560-1_s_at Bos taurus
AF292560 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AF292560-1
CONTROL AF292560 /FEA=CDS_1 /DB_XREF=AAG34048.1 GI:11321082 /PROD=cyan fluorescent protein cfp /GEN=cfp
AFFX-Bt-AF292560-1
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AF298789-1_at Bos taurus
AF298789 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AF298789-1
CONTROL AF298789 /FEA=CDS_1 /DB_XREF=AAG34533.1 GI:11344896 /PROD=phosphoribosylanthranilate isomerase /GEN=TRP1
AFFX-Bt-AF298789-1
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AF323980-1_at Bos taurus
AF323980 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AF323980-1
CONTROL AF323980 /FEA=CDS /DB_XREF=AAK26531.1 GI:13446782 /PROD=minor outer capsid protein VP4 /NOTE=viral protein 4
AFFX-Bt-AF323980-1
No current annotation is available for this probe set at this time. Only library file information is available. // // //
AFFX-Bt-AJ002682-1_s_at Bos taurus
AJ002682 31-Mar-05
Consensus sequence
Affymetrix Proprietary Database
AJ002682-1
CONTROL AJ002682 /FEA=CDS_1 /DB_XREF=CAA05684.1 GI:2623979 REMTREMBL:CAA05684 /GEN=kanamycin resistance gene
AFFX-Bt-AJ002682-1
No current annotation is available for this probe set at this time. Only library file information is available. // // //
24128 12811 Kbytes .Supplementary data files not provided
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