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Platform GPL20182 Query DataSets for GPL20182
Status Public on Aug 04, 2015
Title [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [Gene Symbol Version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts
All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. The sequences from which these probe sets were derived were selected from GenBankĀ®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 133, April 20, 2001) and then refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the University of California, Santa Cruz Golden-Path human genome database (April 2001 release).
In addition, there are 9,921 new probe sets representing approximately 6,500 new genes. These gene sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from the UniGene database (Build 159, January 25, 2003) and refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the NCBI human genome assembly (Build 31).
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
June 03, 2009: annotation table updated with netaffx build 28
June 06, 2012: annotation table updated with netaffx build 32
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=hg-u133-plus
http://www.affymetrix.com/analysis/index.affx
Submission date May 11, 2015
Last update date Aug 04, 2015
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (110) GSM1680800, GSM1680801, GSM1680802, GSM1680803, GSM1680804, GSM1680805 
Series (4)
GSE68761 Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models
GSE71724 Identification of a new gene regulatory circuit involving B cell receptor activated signaling using a combined analysis of experimental, clinical and global gene expression data [tonsil]
GSE71725 Identification of a new gene regulatory circuit involving B cell receptor activated signaling using a combined analysis of experimental, clinical and global gene expression data
Relations
Alternative to GPL570 (official)

Data table header descriptions
ID
SPOT_ID gene symbol

Data table
ID SPOT_ID
DDR1 DDR1
RFC2 RFC2
HSPA6 HSPA6
PAX8 PAX8
GUCA1A GUCA1A
UBA7 UBA7
THRA THRA
PTPN21 PTPN21
CCL5 CCL5
CYP2E1 CYP2E1
EPHB3 EPHB3
ESRRA ESRRA
CYP2A6 CYP2A6
SCARB1 SCARB1
TTLL12 TTLL12
LINC00152 LINC00152
WFDC2 WFDC2
MAPK1 MAPK1
ADAM32 ADAM32
SPATA17 SPATA17

Total number of rows: 20184

Table truncated, full table size 273 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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