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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 09, 2014 |
| Title |
Illumina HiSeq 2500 (Bos taurus) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Bos taurus |
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| Submission date |
Sep 09, 2014 |
| Last update date |
Jan 11, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1957)
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GSM1500769, GSM1500770, GSM1560560, GSM1674022, GSM1674024, GSM1674026
GSM1674027, GSM1674029, GSM1674030, GSM1674032, GSM1674034, GSM1924180, GSM1924181, GSM1924182, GSM1924183, GSM1924184, GSM1924185, GSM1924186, GSM1924187, GSM1924188, GSM1924189, GSM1936970, GSM1936971, GSM1936972, GSM1936973, GSM1936974, GSM1936975, GSM1936976, GSM1936977, GSM1936978, GSM1941734, GSM1941735, GSM1941736, GSM1941737, GSM2038630, GSM2038631, GSM2038632, GSM2038633, GSM2038634, GSM2038635, GSM2038636, GSM2038637, GSM2038638, GSM2038639, GSM2038640, GSM2038641, GSM2038642, GSM2038643, GSM2038644, GSM2038645, GSM2038646, GSM2038647, GSM2038648, GSM2038649, GSM2038650, GSM2038651, GSM2038652, GSM2038653, GSM2038654, GSM2038655, GSM2038656, GSM2038657, GSM2038658, GSM2038659, GSM2038660, GSM2038661, GSM2038662, GSM2038663, GSM2038664, GSM2038665, GSM2038666, GSM2038667, GSM2038668, GSM2038669, GSM2038670, GSM2038671, GSM2038672, GSM2038673, GSM2038674, GSM2038675, GSM2038676, GSM2038677, GSM2042593, GSM2042594, GSM2042595, GSM2042596, GSM2042597, GSM2042598, GSM2072298, GSM2072299, GSM2125430, GSM2125431, GSM2125432, GSM2125433, GSM2125434, GSM2125435, GSM2125436, GSM2125437, GSM2152642, GSM2152643, GSM2152644, GSM2152645, GSM2152646, GSM2152647, GSM2152648, GSM2152649, GSM2152650, GSM2152651, GSM2152652, GSM2152653, GSM2152654, GSM2152655, GSM2152656, GSM2252051, GSM2252052, GSM2252053, GSM2285300, GSM2285301, GSM2285302, GSM2285303, GSM2285304, GSM2285305, GSM2309316, GSM2309317, GSM2309318, GSM2309319, GSM2309320, GSM2309321, GSM2342901, GSM2342902, GSM2342903, GSM2342904, GSM2342905, GSM2342906, GSM2342907, GSM2425326, GSM2425327, GSM2425328, GSM2425329, GSM2428995, GSM2428996, GSM2428997, GSM2428998, GSM2428999, GSM2429000, GSM2429001, GSM2429002, GSM2429003, GSM2429004, GSM2429005, GSM2429006, GSM2429007, GSM2429008, GSM2429009, GSM2429010, GSM2429011, GSM2429012, GSM2429013, GSM2429014, GSM2429015, GSM2429016, GSM2429017, GSM2429018, GSM2429019, GSM2429020, GSM2429021, GSM2429022, GSM2429023, GSM2429024, GSM2429025, GSM2429026, GSM2429027, GSM2429028, GSM2429029, GSM2429030, GSM2429031, GSM2429032, GSM2464066, GSM2464067, GSM2464068, GSM2477886, GSM2477887, GSM2477888, GSM2477889, GSM2477890, GSM2477891, GSM2477892, GSM2477893, GSM2477894, GSM2477895, GSM2477896, GSM2477897, GSM2477898, GSM2477899, GSM2477900, GSM2477901, GSM2477902, GSM2477903, GSM2477904, GSM2477905, GSM2477906, GSM2477907, GSM2477908, GSM2477909, GSM2501625, GSM2501626, GSM2501627, GSM2501628, GSM2501629, GSM2501630, GSM2501631, GSM2501632, GSM2501633, GSM2501634, GSM2501635, GSM2501636, GSM2501637, GSM2501638, GSM2501639, GSM2501640, GSM2501641, GSM2501642, GSM2501643, GSM2501644, GSM2501645, GSM2501646, GSM2501647, GSM2501648, GSM2501649, GSM2501650, GSM2501651, GSM2501652, GSM2501653, GSM2501654, GSM2501655, GSM2501656, GSM2501657, GSM2501658, GSM2501659, GSM2501660, GSM2501661, GSM2575133, GSM2575134, GSM2575135, GSM2575136, GSM2575137, GSM2575138, GSM2575139, GSM2575140, GSM2575141, GSM2575142, GSM2575143, GSM2575144, GSM2575145, GSM2575146, GSM2575147, GSM2575148, GSM2575149, GSM2575150, GSM2575151, GSM2575152, GSM2575153, GSM2575154, GSM2575155, GSM2575156, GSM2575157, GSM2575158, GSM2575159, GSM2575160, GSM2575161, GSM2575162, GSM2575163, GSM2575164, GSM2575165, GSM2575166, GSM2575167, GSM2575168, GSM2575169, GSM2575170, GSM2575171, GSM2575172, GSM2575173, GSM2575174, GSM2575175, GSM2575176, GSM2575177, GSM2575178, GSM2575179, GSM2575180, GSM2575181, GSM2575182, GSM2575183, GSM2575184, GSM2575185, GSM2575186, GSM2575187, GSM2575188, GSM2575189, GSM2575190, GSM2575191, GSM2575192, GSM2575193, GSM2575194, GSM2575195, GSM2575196, GSM2575197, GSM2575198, GSM2575199, GSM2575200, GSM2575201, GSM2575202, GSM2575203, GSM2575204, GSM2575205, GSM2575206, GSM2575207, GSM2575208, GSM2611061, GSM2611062, GSM2611063, GSM2611064, GSM2611065, GSM2611066, GSM2611067, GSM2611068, GSM2611069, GSM2611070, GSM2611071, GSM2611072, GSM2611073, GSM2611074, GSM2611075, GSM2611076, GSM2611077, GSM2611078, GSM2611079, GSM2611080, GSM2611081, GSM2611082, GSM2611083, GSM2611084, GSM2615737, GSM2615738, GSM2615739, GSM2615740, GSM2615741, GSM2615742, GSM2650039, GSM2650040, GSM2650041, GSM2650042, GSM2650043, GSM2650044, GSM2650045, GSM2650046, GSM2650047, GSM2650048, GSM2650049, GSM2650050, GSM2650051, GSM2650052, GSM2650053, GSM2650054, GSM2650055, GSM2650056, GSM2650057, GSM2650058, GSM2650059, GSM2650060, GSM2650061, GSM2650062, GSM2650063, GSM2650064, GSM2650065, GSM2650066, GSM2650067, GSM2650068, GSM2650069, GSM2650070, GSM2650071, GSM2650072, GSM2650073, GSM2650074, GSM2650075, GSM2650076, GSM2650077, GSM2650078, GSM2650079, GSM2650080, GSM2650081, GSM2650082, GSM2650083, GSM2650084, GSM2650085, GSM2650086, GSM2715959, GSM2715960, GSM2715961, GSM2715962, GSM2715963, GSM2715964, GSM2729810, GSM2729811, GSM2729812, GSM2729813, GSM2729814, GSM2729815, GSM2736514, GSM2736515, GSM2736516, GSM2736517, GSM2736518, GSM2736519, GSM2736520, GSM2736521, GSM2736522, GSM2736523, GSM2736524, GSM2736525, GSM2736526, GSM2736527, GSM2736528, GSM2736529, GSM2736530, GSM2736531, GSM2736532, GSM2736533, GSM2736534, GSM2736535, GSM2745781, GSM2745782, GSM2745783, GSM2745784, GSM2745785, GSM2745786, GSM2745787, GSM2745788, GSM2745789, GSM2745790, GSM2776909, GSM2776910, GSM2776911, GSM2776912, GSM2776913, GSM2776914, GSM2776916, GSM2776917, GSM2776918, GSM2776919, GSM2776920, GSM2776921, GSM2776922, GSM2776923, GSM2776924, GSM2776925, GSM2776926, GSM2776927, GSM2776928, GSM2776929, GSM2776930, GSM2776931, GSM2776932, GSM2780337, GSM2780338, GSM2780339, GSM2780340, GSM2780341, GSM2780342, GSM2780343, GSM2780344, GSM2865485, GSM2865486, GSM2865487, GSM2865488, GSM2865489, GSM2865490, GSM2865491, GSM2865492, GSM2868070, GSM2868071, GSM2868072, GSM2868073, GSM2868074, GSM2868075, GSM2868076, GSM2868077, GSM2868078, GSM2868079, GSM2868080, GSM2868081, GSM2868082, GSM2868083, GSM2868084, GSM2868085, GSM2868086, GSM2868087, GSM2868088, GSM2868089, GSM2868090, GSM2868091...
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You can also download a list of all accessions here
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| Series (123)
|
| GSE61251 |
Differentially-expressed miRNAs in MDBK cells infected with bovine viral diarrhea virus compared to MDBK cells |
| GSE63933 |
Onchocerca-derived small RNAs in host nodules and serum |
| GSE68507 |
Cross-species comparison of epigenetic poising in the mammalian germ line |
| GSE74612 |
Oviduct-Embryo Interactions in Cattle: Two-Way Traffic or a One-Way Street? [RNA-Seq] |
| GSE74613 |
Oviduct-Embryo Interactions in Cattle: Two-Way Traffic or a One-Way Street? |
| GSE74879 |
Characterization and Small RNA Content of Extracellular Vesicles in Follicular Fluid of Developing Bovine Antral Follicles |
| GSE75063 |
Transcriptome analysis of mRNA and microRNAs of the intramuscular fat tissues from castrated and intact male Chinese Qinchuan cattle |
| GSE76841 |
Characterisation of the whole blood mRNA transcriptome in Holstein-Friesian and Jersey calves in response to gradual weaning |
| GSE77020 |
Multi-tissue RNA-seq data across three species |
| GSE78526 |
Comparison of gene expression in seminiferous tubules of 3 month old calf versus 9 month old calf using RNA-Seq |
| GSE80376 |
Single Cas9 nickase induced generation of NRAMP1 knockin cattle with reduced off-target effects |
| GSE81449 |
Identification of Beef Heifers with Superior Uterine Capacity for Pregnancy |
| GSE84834 |
Small RNA sequencing of large dense-core vesicle in bovine chromaffin cells |
| GSE85836 |
Genome-wide mapping of MAT2A-associsted regions in bovine blastocysts |
| GSE86847 |
The developmental transcriptome profiling reveals an abundant GosB that regulates cell cycle, proliferation and apoptosis |
| GSE87908 |
Circular RNAs in cattle muscle: developmental stage-dependent changes |
| GSE92288 |
An atlas and analysis of bovine skeletal muscle long noncoding RNAs |
| GSE92398 |
RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-feed efficient Nordic dairy cattle |
| GSE93855 |
Comparative transcriptomic analysis provides insights into high-altitude adaptation |
| GSE94541 |
Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cells transcriptomics |
| GSE95311 |
Global gene expression profiles in male and female single bovine blastocysts |
| GSE97673 |
Effect of early calf-hood nutrition on the transcriptomic profile of the HPT axis in Holstein-Friesian bulls |
| GSE97674 |
Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose in Holstein-Friesian bulls |
| GSE98736 |
TRANSCRIPTIONAL ANALYSIS OF MUSCLE FROM CATTLE WITH ALTERNATIVE NCAPG/LCORL GENOTYPES |
| GSE98818 |
Whole Genome Bisulfite Sequencing of Longissimus Dorsi Muscles between Japanese Black (Wagyu) and Chinese Red Steppes Cattle |
| GSE99678 |
Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells |
| GSE101796 |
Genome-wide differential DNA methylation in tropically adapted Creole cattle and their Iberian ancestors |
| GSE102169 |
Reduced representation bisulfite sequencing (RRBS) data from cattle monocytes, fibroblasts and sperm cells |
| GSE102435 |
Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome |
| GSE102736 |
Consequences of supplying methyl donors during pregnancy on the methylome of the offspring from lactating and non-lactating dairy cattle |
| GSE103628 |
Transcriptome profiles in peripheral white blood cells at the time of artificial insemination discriminate beef heifers with different fertility potential |
| GSE103734 |
Genome-wide histone modification profiling of inner cell mass and trophoectoderm of blastocyst stage bovine embryos by novel low input RAT-ChIP |
| GSE107366 |
Transcriptional profiling of milk epithelial cells of Kashmiri and Jersey cattle |
| GSE107477 |
Hepatic transcriptome analysis for differential gene expression between steers of divergent feed efficiency phenotypes in three Canadian beef breeds |
| GSE110036 |
Efficient derivation of stable primed pluripotent embryonic stem cells from bovine blastocysts [RNA-seq] |
| GSE110040 |
Efficient derivation of stable primed pluripotent embryonic stem cells from bovine blastocysts |
| GSE110324 |
Small RNA sequencing of cow's peripheral plasma exosomes |
| GSE110399 |
Analysis of the mRNA content of bovine oviductal extracellular vesicles during the estrous cycle |
| GSE110400 |
DNA methylomes of the bovine gametes and in vivo preimplantation embryos |
| GSE110412 |
The bovine alveolar macrophage (bAM) DNA methylome is resilient to infection with Mycobacterium bovis |
| GSE110443 |
Analysis of the small non-coding RNA content of bovine oviductal extracellular vesicles during the estrous cycle |
| GSE110444 |
Analysis of the mRNA and small non-coding RNA content of bovine oviductal extracellular vesicles during the estrous cycle |
| GSE111464 |
The effect of breed and diet on the liver transcriptome of beef steers divergent in RFI |
| GSE112793 |
An examination of the transcriptional control of energetic efficiency in cattle divergent for RFI |
| GSE113135 |
The effect of diet and breed on global gene expression profiles of animals divergent for RFI |
| GSE114688 |
Transcriptome analysis of the effect of maternal lactation diet (dried distilers grains and solubles-DDGS versus control) on longissimus muscle composition of mature steer progeny. |
| GSE115756 |
Characterization of the Endometrial Transcriptome in Early Diestrus Influencing Pregnancy Establishment in Dairy Cattle after Transfer of In-Vitro Produced Embryos |
| GSE116733 |
Initial host response to mycobacterial infection is orchestrated through H3K4 methylation-mediated RNA polymerase II binding at key immune function genes [miRNA-seq] |
| GSE116734 |
Initial host response to mycobacterial infection is orchestrated through H3K4 methylation-mediated RNA polymerase II binding at key immune function genes. |
| GSE118456 |
miRNA profiling of extracellular vesicles from Theileria annulata infected B cells (TBL20) and their uninfected control counterparts (BL20) |
| GSE119563 |
A transcriptome analyses of Longissimus dorsi muscle in Nguni cattle finished on different feedlot diets |
| GSE121588 |
ERK1/2-dependent gene expression in the bovine ovulating follicle |
| GSE121758 |
Methylome Dynamics of Bovine Gametes and In Vivo Early Embryos |
| GSE122858 |
Parasite specific 7SL-derived small RNA is an effective target for diagnosis of active trypanosomiasis infection |
| GSE123869 |
Expression of lncRNAs between buffalo and yellow cattle muscle |
| GSE124418 |
Small non-coding RNA transcriptome of four high-altitude vertebrates and their low-altitude relatives |
| GSE125964 |
Defining the inflammatory gene signature at day 7 postpartum associated with the development of bovine uterine disease |
| GSE126424 |
Cross-species association of microRNA expression in mammary epithelial cells with stem/progenitor characteristics and cancer susceptibility |
| GSE129416 |
Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 1] |
| GSE129417 |
Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 2] |
| GSE129420 |
Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 5] |
| GSE129421 |
Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 6] |
| GSE129422 |
Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 7] |
| GSE129423 |
Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation |
| GSE129819 |
MicroRNA expression profile of bovine monocyte derived macrophages infected with Mycobacterium avium subsp. Paratuberculosis |
| GSE131850 |
Divergences of sperm DNA methylomes between monozygotic twin seed bulls reveal fertility-related genes (WGBS) |
| GSE131851 |
Divergences of sperm DNA methylomes between monozygotic twin seed bulls reveal fertility-related genes |
| GSE132347 |
Transcriptional profiling of embryo cryotolerance |
| GSE133587 |
Estrous cycle impacts microRNA content in extracellular vesicles that modulate bovine cumulus cell transcripts during in vitro maturation |
| GSE133610 |
Alterations of miRNAs in MDBK cells expressing BPV-13 E5 |
| GSE133614 |
Alterations of miRNAs and mRNAs in MDBK cells expressing BPV-13 E5 |
| GSE133735 |
High throughput circRNA sequencing for adipose tissue of Qinchuan cattle |
| GSE136299 |
Evolved Levels of Placental Invasion in Human and Bovine Endometrial Stroma |
| GSE137943 |
Analyses of transcriptomes of multiple tissues in cattle |
| GSE143596 |
Effects of treatment with bovine oviductal extracellular vesicles on the transcriptome of bovine day 7 in vitro produced embryos |
| GSE143848 |
DNA methylation changes during preimplantation development reveal inter species-differences and reprogramming events at imprinted genes [RNA-Seq] |
| GSE143849 |
DNA methylation changes during preimplantation development reveal inter species-differences and reprogramming events at imprinted genes [BS-Seq] |
| GSE143850 |
DNA methylation changes during preimplantation development reveal inter species-differences and reprogramming events at imprinted genes |
| GSE144432 |
Bovine hepatic miRNAome profiling and differential miRNA expression analyses between beef steers with divergent feed efficiency phenotypes |
| GSE146877 |
Genome-wide DNA methylation in cows subjected to different stress level as assessed by cortisol in milk |
| GSE146971 |
Gene expression profiles in cows subjected to different stress level as assessed by cortisol in milk |
| GSE147184 |
Analyses of methylomes of Bones in cattle |
| GSE147742 |
Sperm miRNAs - potential mediators of bull age and early embryo development |
| GSE147813 |
Bovine monocyte derived macrophages from peripheral blood |
| GSE148447 |
Whole transcriptome sequencing of bovine mammary epithelial subpopulations |
| GSE148707 |
Analyses of transcriptomes of mammary and lymphocyte tissues in cattle |
| GSE149505 |
Transcriptomes analysis of peripheral blood mononuclear cell revealed the immune heterogeneity of bTB at different stages |
| GSE149856 |
Variability of bovine milk EV measurements in health and subclinical mastitis |
| GSE150912 |
Analysis of circulating-miRNA expression in lactating Holstein cows under summer heat stress |
| GSE153699 |
Interaction of preimplantation factor with the global bovine endometrial transcriptome |
| GSE154299 |
Transcriptomic profiling of cerebrum, liver, and muscle tissues of 50 days fetuses in response to early maternal nutrient restriction |
| GSE158818 |
Effects of glyphosate residues and different concentrate feed proportions in dairy cow rations on hepatic gene expression, liver histopathology and biochemical blood parameters |
| GSE160721 |
Identification of reproductive performance-related genes in the bovine hypothalamus and pituitary gland and analysis of the regulatory network |
| GSE161221 |
Genome-wide H3K4me3 profile in in vitro produced bovine blastocysts |
| GSE163644 |
RNA sequencing reveals that methionine supply during late-gestation alters neonatal Holstein heifer calf liver transcriptome profiles |
| GSE167574 |
Transcriptome analysis of cattle experimentally infected with foot-and-mouth disease virus |
| GSE171436 |
RNA-Seq analysis comparing gene expression in bovine mammary stromal and parenchymal regions |
| GSE171701 |
Genome-wide H3K27me3 profile in in vitro produced bovine blastocysts |
| GSE172056 |
Expression profiling of microRNA from peripheral blood of dairy cows in response to Staphylococcus aureus-infected mastitis |
| GSE179651 |
Genome-wide maps of MbovP475-binding sits in BoMac cells. |
| GSE179821 |
Identification of H3K27ac-marked enhancers in bovine satellite cells during differentiation |
| GSE180931 |
Establishment of Bovine Induced Pluripotent Stem Cells |
| GSE181766 |
The Small RNA sequencing of 12 mammary gland for Chinese Holstein Cattle |
| GSE186730 |
Transcriptomic changes in bovine skeletal muscle cells after resveratrol treatment |
| GSE194041 |
Effect of enhanced early life nutrition on testes miRNA transcriptome in bull calves |
| GSE206736 |
Dynamics of regulatory elements in the liver during ruminant evolution |
| GSE213631 |
Pyruvate and recombinant human basic fibroblast growth factor rescue the pluripotency and metabolism of bovine embryonic stem cells on low-density feeder layers |
| GSE214588 |
miRNA-150_R-1 mediates the HIF-1/ErbB signaling pathway to regulate the adhesion of endometrial epithelial cells in cows experiencing retained placenta |
| GSE218872 |
Identification of Target Genes and Pathways Related to Heat Tolerance in Chinese Holstein Cows |
| GSE220923 |
Establishment of bovine trophoblast stem cells [RNA-seq] |
| GSE220924 |
Establishment of bovine trophoblast stem cells [WGBS] |
| GSE220925 |
Establishment of bovine trophoblast stem cells |
| GSE225693 |
Transcriptome analysis of pre-implantation embryos |
| GSE232591 |
Transcriptomic profilings of bovine mammary epithelial cells stimulated by ten different essential amino acids |
| GSE232617 |
Circadian rhythm does not affect the miRNA cargo of bovine raw milk extracellular vesicles |
| GSE239546 |
A conserved transcriptional program for MAIT cells across mammalian evolution [Btaurus_thymus_MAIT] |
| GSE239558 |
A conserved transcriptional program for MAIT cells across mammalian evolution |
| GSE247921 |
The role of interleukin-10 receptor alpha (IL10Rα) in Mycobacterium avium subsp. paratuberculosis infection of a mammary epithelial cell line |
| GSE248185 |
Endometrial DNA methylation signatures of cattle fertility |
| GSE249060 |
Evaluation of Immunomodulatory Effects ofFusariumMycotoxins Using Bacterial Endotoxin-Stimulated Bovine Epithelial Cells and Macrophages in Co-Culture |
| GSE253481 |
Transcriptomic analysis of bovine endometrial epithelial cells in response to interferon tau and hormone stimulation |
| GSE254886 |
Comprehensive analysis of differentially expressed mRNA, circRNA and miRNA and their ceRNA networks in testis of cattle-yak, yak and cattle |
| GSE269311 |
Effect of breed and dietary composition on the miRNA profile of beef steers divergent for feed efficiency |
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| Supplementary data files not provided |
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