NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL19111 Query DataSets for GPL19111
Status Public on May 21, 2015
Title Agilent-036832 Ferret_44K_v3
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mustela putorius furo
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16036832 or 2536832.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 22, 2014
Last update date May 21, 2015
Contact name Victor Borrell
E-mail(s) vborrell@umh.es
Organization name CSIC
Department Institute of Neuroscience
Lab 221
Street address Av Ramon y Cajal s/n
City San Juan de Alicante
State/province Alicante
ZIP/Postal code 03550
Country Spain
 
Samples (30) GSM1485029, GSM1485030, GSM1485031, GSM1485032, GSM1485033, GSM1485034 
Series (2)
GSE60687 Sharp changes in gene expression levels along germinal layers distinguish the development of gyrencephaly
GSE63203 A restricted period for formation of Outer Subventricular Zone defined by Cdh1 and Trnp1 levels

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner pos CONTROL
2 266 168 DarkCorner pos CONTROL
3 266 166 DarkCorner pos CONTROL
4 266 164 DarkCorner pos CONTROL
5 266 162 DarkCorner pos CONTROL
6 266 160 DarkCorner pos CONTROL
7 266 158 DarkCorner pos CONTROL
8 266 156 DarkCorner pos CONTROL
9 266 154 DarkCorner pos CONTROL
10 266 152 DarkCorner pos CONTROL
11 266 150 DarkCorner pos CONTROL
12 266 148 CUST_16518_PI427051300 FALSE F1F2241411 unmapped TCTCCCATGTCCGCTGCCATGATGGCCATTGCAATCATCAAGGTGCACAGGATCTACCGG
13 266 146 CUST_11844_PI427051300 FALSE F1F2008359 unmapped CTACCTCATGGAACTTTCGGGCTTGTGGGAGACTAATATCATTACATAAATAAAATTGTT
14 266 144 CUST_13997_PI427051300 FALSE F1F2020610 unmapped TATGGTAATTCTTTCCTTCACTTGCTCAACTGAAATCCTAGTTCTCCTTCATCCCACAGG
15 266 142 CUST_7077_PI427051300 FALSE F1F2238219 unmapped ACTCTGGATTGGAATGGAAAGATGTCCGAGATTAAGAAGAAGATCCAGTCAGTCCTTCCC
16 266 140 CUST_19629_PI427051300 FALSE F1F2170190 unmapped CCTTTCATGATCTTGGGCGAATCATCTAATGTTTTTGTGCCTCAACAATTTCACTTTTTA
17 266 138 CUST_32733_PI427051300 FALSE Contig2717 unmapped GTGAGACACTGCTTAGTATATGTAGTTTTGCCATCTTAACATTCCTGTAAAGTGCTTAAC
18 266 136 CUST_3187_PI427051300 FALSE Contig3108 unmapped GGATCATTAAGGCAAGACTACGTTTTAAATTCCAAAGATTGCTTACAATGGTATTGTGGA
19 266 134 CUST_32516_PI427051300 FALSE F1F2021511 unmapped TTTCTTCCCTCCTTGGGTGCCAGGACCTTTAGTTGTACTCTACTCAAAGTGCTCAAGAAT
20 266 132 CUST_8091_PI427051300 FALSE F1F2125043 unmapped AGTCACCGTGCAGGATGGAAAGTTCTCTTTTCCTTTGGATTCAGTGAAGAAGCTCAAGGA

Total number of rows: 45220

Table truncated, full table size 5337 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap