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Status
Public on Dec 22, 2014
Title
Nimblegen_Oryza sativa japonica_45K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Oryza sativa Manufacturer
NimbleGen
Manufacture protocol
The custom-array design was based on a 385K Nimblegen array format and is composed of 90,000 probes representing 45,000 genes and 201,691 oligomers corresponding to previously described copies of LTR retrotranposons available on the retrOryza database. Array characteristics: Probe length = 60 bp, 2 probes per gene (mostly). Manufacturing and processing of arrays, hybridization and scanning were performed according Nimblegen's recommendations
Description
The platform table is based on the Probe ID features. No control probes are included in this table. The .ndf file is linked below as a supplementary file.
Submission date
Jul 07, 2014
Last update date
Dec 24, 2014
Contact name
Benoît DROGUE
Organization name
Université de Lyon
Department
Université Lyon 1
Lab
CNRS UMR5557 Ecologie Microbienne
Street address
Boulevard du 11 novembre
City
Villeurbanne
State/province
Rhône-Alpes
ZIP/Postal code
69100
Country
France
Samples (18)
GSM1429329 , GSM1429330 , GSM1429331 , GSM1429332 , GSM1429333 , GSM1429334
GSM1429335 ,
GSM1429336 ,
GSM1429337 ,
GSM1429338 ,
GSM1429339 ,
GSM1429340 ,
GSM1429341 ,
GSM1429342 ,
GSM1429343 ,
GSM1429344 ,
GSM1429345 ,
GSM1429346 Series (1)
GSE59137 Plant root transcriptome profiling of Azospirillum-rice cooperation
Data table header descriptions ID Probe Name
SEQ_ID SEQUENCE
Data table ID SEQ_ID SEQUENCE dbretro000001
rymv
AATTCTTCGGCGGAAGGAGGGATCGCTTTCGCAATATGCTCCTTTCCTAGCTTCAATTGT
dbretro000002
rymv
ACCGTGTCATACACGTTGCAGCGTGGCTACAATTCTTCGGCGGAAGGAGGGATCGCTTTC
dbretro000003
rymv
TCTGCTGAGTCGGTCGTATAAGAACTTCCAACCGTGTCATACACGTTGCAGCGTGGCTAC
dbretro000004
rymv
TATAGCCCGCGGTAATGGCTCTTGCCACAGTCTGCTGAGTCGGTCGTATAAGAACTTCCA
dbretro000005
rymv
GAGAATGCCAAACCCAGGTGAGTGCGTGCGTATAGCCCGCGGTAATGGCTCTTGCCACAG
dbretro000006
rymv
GATCGTTCACTGCGTCAACGTCCCAGGTCTGAGAATGCCAAACCCAGGTGAGTGCGTGCG
dbretro000007
rymv
TTGTGGGGTTGAAGTCGGCGCTGAGAACTGGATCGTTCACTGCGTCAACGTCCCAGGTCT
dbretro000008
rymv
AGGCAAATGACACTGACACCCAACCAACCTTTGTGGGGTTGAAGTCGGCGCTGAGAACTG
dbretro000009
rymv
TCGTATAGTAGTGAGCTGTACACCGAGTACAGGCAAATGACACTGACACCCAACCAACCT
dbretro000010
rymv
GGATGTTAACGAAACACTTCACCTGCTCACTCGTATAGTAGTGAGCTGTACACCGAGTAC
dbretro000011
rymv
CAGCACACACTACGTCGTAATGGACAGGTGGGATGTTAACGAAACACTTCACCTGCTCAC
dbretro000012
rymv
CCTCGTCCTGCTGAGCACTGCGCTCGCAATCAGCACACACTACGTCGTAATGGACAGGTG
dbretro000013
rymv
CGTTACGCTCGTTGTGCTCACGGTCGATCTCCTCGTCCTGCTGAGCACTGCGCTCGCAAT
dbretro000014
rymv
GGGCCCGAGCGTTGCAGGCAGAAATCTCTGCGTTACGCTCGTTGTGCTCACGGTCGATCT
dbretro000015
rymv
AAACCAAACTTGCTGGTCTACCTTCACTCAGGGCCCGAGCGTTGCAGGCAGAAATCTCTG
dbretro000016
rymv
CGGGTATATCACAAGCGTCCCGCGAAAGATAAACCAAACTTGCTGGTCTACCTTCACTCA
dbretro000017
rymv
ATTTGTCAAACCGGCACGTTCCGGAGTGCTCGGGTATATCACAAGCGTCCCGCGAAAGAT
dbretro000018
rymv
GGCAGGACTGATTCCCTCAAAAGTTGAGGTATTTGTCAAACCGGCACGTTCCGGAGTGCT
dbretro000019
rymv
AGTCTGAACCAAGACCGCTCCTTAGATGTCGGCAGGACTGATTCCCTCAAAAGTTGAGGT
dbretro000020
rymv
GACCAACAACAGAAAAGCCCATCCCGTGTTAGTCTGAACCAAGACCGCTCCTTAGATGTC
365079 34383 Kbytes .Supplementary file Size Download File type/resource GPL18899_2007-09-17_OS_CC_EXP.ndf.gz
18.1 Mb
(ftp) (http) NDF
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