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Status
Public on Jan 01, 2015
Title
Roche Nimblegen Fusarium graminearum 135K microarray
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Fusarium graminearum Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Submission date
Jun 16, 2014
Last update date
Jan 01, 2015
Contact name
Yeon-Ki Kim
E-mail(s)
kim750a11@gmail.com Phone
82-31-321-6351
Organization name
GreenGene Biotech Inc.
Department
GreenGene Biotech Inc.
Lab
Genomics & Genetics Ins.
Street address
38-2 Namdong
City
Yongin
State/province
Kyonggido
ZIP/Postal code
449-728
Country
South Korea
Samples (12)
GSM1413201 , GSM1413202 , GSM1413203 , GSM1413204 , GSM1413205 , GSM1413206
Series (1)
GSE58543 Genome-wide expression profiling reveals putative target genes of the mating type loci (MAT1-1 and MAT1-2) in Fusarium graminearum during sexual devleopment
Data table header descriptions ID SEQ_ID sequence identifier
SPOT_ID NCBI Conserved Domain database
CDD_Domain SPOT_ID
Data table ID SEQ_ID SPOT_ID CDD_Domain SPOT_ID f_gramin_000001
f_gramin_000001
UNKNOWN
f_gramin_000002
f_gramin_000002
pfam03302 gnlCDD|66945 pfam03302, VSP, Giardia variant-specific surface protein
f_gramin_000003
f_gramin_000003
UNKNOWN
f_gramin_000004
f_gramin_000004
UNKNOWN
f_gramin_000005
f_gramin_000005
pfam03302 gnlCDD|66945 pfam03302, VSP, Giardia variant-specific surface protein
f_gramin_000006
f_gramin_000006
UNKNOWN
f_gramin_000007
f_gramin_000007
pfam00067 gnlCDD|63955 pfam00067, p450, Cytochrome P450
f_gramin_000008
f_gramin_000008
UNKNOWN
f_gramin_000009
f_gramin_000009
COG1289 gnlCDD|31480 COG1289, COG1289, Predicted membrane protein [Function unknown]
f_gramin_000010
f_gramin_000010
COG4221 gnlCDD|33946 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
f_gramin_000011
f_gramin_000011
pfam00067 gnlCDD|63955 pfam00067, p450, Cytochrome P450
f_gramin_000012
f_gramin_000012
pfam00083 gnlCDD|63971 pfam00083, Sugar_tr, Sugar (and other) transporter
f_gramin_000013
f_gramin_000013
COG1215 gnlCDD|31408 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
f_gramin_000014
f_gramin_000014
pfam00083 gnlCDD|63971 pfam00083, Sugar_tr, Sugar (and other) transporter
f_gramin_000015
f_gramin_000015
pfam05721 gnlCDD|69256 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)
f_gramin_000016
f_gramin_000016
COG0624 gnlCDD|30969 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
f_gramin_000017
f_gramin_000017
pfam00487 gnlCDD|64356 pfam00487, FA_desaturase, Fatty acid desaturase
f_gramin_000018
f_gramin_000018
cd00876 gnlCDD|57935 cd00876, Ras, Ras family
f_gramin_000019
f_gramin_000019
pfam04484 gnlCDD|68069 pfam04484, DUF566, Family of unknown function (DUF566)
f_gramin_000020
f_gramin_000020
pfam07380 gnlCDD|70831 pfam07380, Pneumo_M2, Pneumovirus M2 protein
13388 1731 Kbytes .Supplementary file Size Download File type/resource GPL18812_071130_GGV_f_gramin_YK_Tiling.ncd.gz
249 b
(ftp) (http) NCD
GPL18812_GGB_Fusarium_135k.ndf.gz
6.3 Mb
(ftp) (http) NDF
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