GEO help: Mouse over screen elements for information.
Status
Public on Sep 01, 2014
Title
020940_IRD_RHIZO-CASUARINA-15K-V1.0
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Casuarina glauca
Manufacturer
IMAXIO - Biopôle Clermont-Limagne- 63360 Saint-Beauzire, France- Tél: +33 (0)4 73 64 43 90 – Contact : V. VIDAL. This platform is Certified Service Provider by AGILENT.
Manufacture protocol
Agilent protocol
Submission date
Mar 04, 2014
Last update date
Sep 01, 2014
Contact name
Valérie HOCHER
E-mail(s)
valerie.hocher@ird.fr
Organization name
IRD
Department
DIADE
Lab
RHIZO
Street address
911 av. Agropolis BP64501
City
MONTPELLIER CDX 5
ZIP/Postal code
34394
Country
France
Samples (4)
GSM1339604 , GSM1339605 , GSM1339606 , GSM1339607
Series (1)
GSE55582
Gene profiling during symbiosis between the actinorhizal tree Casuarina glauca and the actinobacteria Frankia CcI3 after treatment with 1-naphtoxy acetic acid, an auxin influx inhibitor.
Data table header descriptions
ID
CLUSTER_COMPOSITION
List of EST composing the clusters
GB_LIST
SEQUENCE
EST or contig sequence (added for sequences which were hybridized on microarray but that where not of enough quality for EMBL submission acceptation)
BLAST
Blast result (first blast hit)
GO_IDS
Gene Ontology Indentifier
GO_SCORE
GO score
SPOT_ID
Data table
ID
CLUSTER_COMPOSITION
GB_LIST
SEQUENCE
BLAST
GO_IDS
GO_SCORE
SPOT_ID
CGCL1000Contig1
CG-R02f_005_O18,CG-N02f_021_A23,CG-R02f_018_D02,CG-J02f_004_G11,CG-N02f_038_J07,
FQ361390 , FQ322171 , FQ370481 , FQ325900 , FQ318284
C:GO:0012505 C:GO:0005739
2
CGCL1001Contig1
CG-N02f_002_L02,CG-R02f_033_A07,CG-R02f_027_G22,CG-R02f_030_I10,CG-R02f_019_D22,
FQ366299 , FQ368191 , FQ369019 , FQ368580 , FQ370306
germinlike protein 5
0
CGCL1002Contig1
CG-R02f_001_N10,CG-J04f_005_B02,CG-J04f_005_E05,CG-R02f_023_A17,CG-R02f_019_N21,
FQ361995 , FQ325544 , FQ325529 , FQ369686 , FQ370211
ATCAAATCCCACACAAATGTGGACCTGAGGGTCCTTTCGTACTACCCAGGTAAAAACTATAGTATCTGCAGATAGAAGCCGACCTGCCTCACGGCGGTCTGAACTCAAATCATGTGGGGTTTTAATAGTCGAACAGACTAATGAACCTGACTCTTGCGCCATGGCCACACCCCCAATTCAACATCGAGGTCGCAATCAGCTGTTTAAATAAGAACTAAAAACAACTATAACGCTGTTAACCCCGCAGTAATTTTAAACTCTTAAAAATCTTAGTCTATGTGCCGATCGAACCGGCACGGTTACCCCAACCAAATCTTGTTTACAGCTTTTTGTGCTGTTAAACCAGATCAAACTTGACAGGGTCTTCTTGTCACGCAGAGACTCGCTGGCATCTTCACCAGCAATTAAATTTACACGAACTGCCGCTGATACAGCCAACCCCCAAACAACCTTTCATTCCATTCCCTAATTAAGAGACTAGTTATTATGCTACCTTAGTACAGTCAAAATACTGCAGCCATTCAGAAAATCCATTGGGCAGGCTACACTATGCATATATCACATAGCTATGTTTTTGTTAAACAGTTGAGAGTTGTGTTGCCGAGTTCATAAGCGACAATTAATTAAAACAGCTTAGTTAGCTGCCAAATAGTACTAATTCATCGATTAATATTTAGCCATGTTTTGACTAAAACCGCAGGTGAAAATATTCGAAAGTAAATTTTAATATATTATCTATAACGAAAAACTAAATTAGGCTGCTTAAAAGCCATACTTTAAAAATTTAAATTAGAATAATTCAACTCGGCACCAGTTTATCCGGGTGCCGACCATTACCAGCATTCGCTGTGCTAACCTATCCCGACGGAACCAGATATCATCTGTTACGGATAAAAGTTCTCCTCAAGTTTAGAATAAAAAGATACTAATGAAACAGTATCAAACCTACCAAACTAGATCAACAGACTTCGGGAAATTTAAATCTTTAAATTTTTCCGACGACCATTATGCCAAAAGTATAAAAATTACATACTAGCTTAAAATAAACCCTCACGGTTCAATTTTAATATAAGCCCC
0
CGCL1003Contig1
CG-N02f_023_E23,CG-R02f_011_A08,CG-R02f_011_A12,CG-R02f_049_O13,CG-R02f_025_A09,
FQ363963 , FQ371526 , FQ371524 , FQ376313 , FQ369373
glycinerich rnabinding protein
F:GO:0003676 F:GO:0000166
2
CGCL1004Contig1
CG-N02f_008_H20,CG-N02f_012_I22,CG-R01f_009_E07,CG-R02f_008_E05,CG-R02f_042_N06,
FQ314233 , FQ313238 , CO037136.1 , FQ371931 , FQ366646
at1g33800 f14m2_23
C:GO:0012505
1
CGCL1005Contig1
CG-R02f_004_O06,CG-R02f_001_M19,CG-R02f_009_J06,CG-R02f_011_H08,CG-N02f_019_J19,
FQ361544 , FQ362002 , FQ371729 , FQ371469 , FQ364370
peroxisomal membrane protein(22kda)
0
CGCL1006Contig1
CG-N02f_004_A03,CG-N02f_025_G14,CG-N02f_032_K21,CG-R02f_005_A18,CG-N02f_028_H05,
FQ315232 , FQ321110 , FQ319586 , FQ375877 , FQ320352
fiber protein fb11
C:GO:0016023 C:GO:0005739
2
CGCL1007Contig1
CG-N02f_001_F23,CG-N02f_015_I19,CG-N02f_037_N16,CG-N02f_002_O10,CG-N02f_037_A13,
FQ315872 , FQ312489 , FQ318432 , FQ315501 , FQ318616
0
CGCL1008Contig1
CG-N02f_001_N13,CG-N02f_024_P11,CG-N02f_040_P22,CG-R02f_006_P03,CG-R02f_039_N16,
FQ315766 , FQ321227 , FQ317750 , FQ361232 , FQ367157
atpdil21 mee30 une5 (pdilike 21) thioldisulfide exchange intermediate
P:GO:0045454 C:GO:0005783 F:GO:0016853
3
CGCL1009Contig1
CG-R02f_029_G01,CG-J02f_003_I24,CG-J02f_006_B05,CG-R02f_030_A11,CG-N02f_002_O18,
FQ368735 , FQ326955 , FQ326466 , FQ368645 , FQ366271
probable plasma membrane intrinsic protein 1c
P:GO:0006810 C:GO:0016021 F:GO:0005215
3
CGCL100Contig1
CG-N02f_034_I13,CG-R02f_007_J16,CG-R02f_021_G11,CG-R02f_009_D19,CG-N02f_018_I15,CG-N02f_008_P02,CG-N02f_025_B24,CG-R02f_024_N03,CG-N02f_025_M02,CG-N02f_039_H18,CG-N02f_036_B07,CG-N02f_041_A17,CG-R02f_014_P18,CG-N02f_028_J04,CG-R02f_012_K21,CG-R02f_045_A15,CG-R02f_028_P12,CG-N01f_013_H01,CG-N01f_005_B04,CG-N01f_002_B08,CG-N02f_004_A16,CG-R02f_006_C08,CG-R02f_032_G17,CG-N02f_036_B05,CG-R02f_044_B08,
FQ319169 , FQ372023 , FQ369956 , FQ371782 , FQ322773 , FQ314127 , FQ321188 , FQ369407 , FQ321017 , FQ318081 , FQ318821 , FQ317735 , FQ370948 , FQ320318 , FQ371297 , FQ377126 , FQ368794 , CO038669.1 , CO038537.1 , CO038453.1 , FQ315226 , FQ361358 , FQ368277 , FQ318822 , FQ377301
60s ribosomal protein l37a
C:GO:0005840 F:GO:0003735 F:GO:0008270 P:GO:0006412 C:GO:0005739
5
CGCL1010Contig1
CG-N01f_005_D10,CG-N02f_004_I17,CG-N01f_006_A01,CG-N02f_017_N23,CG-N02f_025_K18,
CO038508.1 , FQ315137 , CO038326.1 , FQ322923 , FQ321037
at1g77350 f2p24_6
C:GO:0012505
1
CGCL1011Contig1
CG-N02f_001_H13,CG-R02f_029_N14,CG-R02f_041_D07,CG-R02f_047_B21,CG-R02f_023_K15,
FQ366427 , FQ368670 , FQ366907 , FQ376788 , FQ369584
miox4 (myoinositol oxygenase 4)
F:GO:0050113
1
CGCL1012Contig1
CG-N02f_009_J14,CG-R02f_039_O17,CG-N02f_016_H06,CG-R02f_015_K20,CG-R02f_003_H19,
FQ313964 , FQ372179 , FQ312307 , FQ370864 , FQ361744
rna polymerase beta subunit
F:GO:0003899 P:GO:0006351 F:GO:0003677 C:GO:0009507
4
CGCL1013Contig1
CG-J02f_003_D11,CG-J02f_003_K05,CG-N02f_009_J05,CG-N02f_019_I12,CG-J02f_005_D11,
FQ327028 , FQ326942 , FQ313970 , FQ322530 , FQ326639
0
CGCL1014Contig1
CG-N02f_003_F15,CG-N02f_023_K24,CG-R02f_006_M04,CG-N02f_029_C17,CG-R02f_049_N17,
FQ315389 , FQ321533 , FQ361262 , FQ320171 , FQ376322
signal peptidase
C:GO:0005792 P:GO:0006465 C:GO:0016021 F:GO:0009003 C:GO:0005787
5
CGCL1015Contig1
CG-J07f_003_F19,CG-J07f_006_F01,CG-J07f_004_M15,CG-J07f_003_L15,CG-J07f_006_N12,
FQ324449 , FQ323617 , FQ324044 , FQ324347 , FQ323458
ACTTGAAAAAATACATAATTTTTTCACTTGCAAATGGAGAGATGAAAAAATAACATGTGAGTTGAGGACCCTTCAGAAAAGTATCCATGATTTGATAGCATAATGATAAGACAGATAAACCTCAACCTTGATAAATCTATACATGACTAGAGCTTGAAACATAGTATAGCTTAGAAGAAACATTGTTCAAAGCTCAATGTAGCTGTGCCTATATCTAATAAGCGCCTTCTGGGATTATAACAAGCAAAAAGGCTGAGAAACATGATATTACAACATGAATACACAACTTAAAGCGCATGATAACTTCAGATTGGGGAATGGACGATTTCCAGCAGGAGCCAAGATGCATTTCACAGTCGAACCACCCTTGGAAGTAGAACTCGTAGGAGTTGAATTCTATTATGACCAACTCAATCAAAACCTTGTTCCACTTCTATAGTTGGCAGCAGGACATCGATAGATTTTGCATACTGCTGAAACTGCAACAAGCCATACGGCATTGGACCATTGCCAGTTCAACAACTCTTTCACAATCTCTTCAGATTTATGAATTAACTCCTG
0
CGCL1016Contig1
CG-J07f_001_O20,CG-J07f_005_H09,CG-J07f_004_L16,CG-J07f_003_L03,CG-J07f_006_O21,
FQ324872 , FQ323864 , FQ324060 , FQ324356 , FQ323431
arystal structure of the gdpmannosedehydratase ternary complex with nadph and gdp
F:GO:0008446 P:GO:0009826
2
CGCL1017Contig1
CG-N02f_010_E01,CG-R02f_040_C06,CG-R02f_039_J16,CG-J02f_003_K15,CG-N02f_027_J15,
FQ313800 , FQ367109 , FQ367195 , FQ325984 , FQ320571
md2related lipid recognition domaincontaining protein ml domaincontaining protein
C:GO:0012505 F:GO:0003674 P:GO:0008150
3
CGCL1018Contig1
CG-N02f_007_C07,CG-R02f_013_G01,CG-N02f_020_F14,CG-R02f_015_M04,
FQ314562 , FQ371192 , FQ322332 , FQ370850
hydrophobic low temperature and salt responsive
C:GO:0012505 C:GO:0016023 C:GO:0016021 P:GO:0042538
4
Total number of rows: 14543 Table truncated, full table size 1930 Kbytes .
Supplementary data files not provided