NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL17976 Query DataSets for GPL17976
Status Public on Oct 20, 2014
Title [hGlue_3_0_v1] Affymetrix Human hGlue_3_0_v1 Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description 34834 mRNAs and 39224 lncRNAs
 
Submission date Nov 22, 2013
Last update date Oct 20, 2014
Contact name Zhifen Liu
E-mail(s) liuzhifen5518@163.com
Phone +863514639641
Organization name 1st hospital of Shanxi Medical University
Department Psychiatry
Street address 85 Jiefang South Road
City TaiYuan
State/province Shanxi
ZIP/Postal code 030001
Country China
 
Samples (22) GSM1276026, GSM1276027, GSM1276028, GSM1276029, GSM1276030, GSM1276031 
Series (1)
GSE52790 lncRNA and mRNA expression data in peripheral blood sampled from MDD patients

Data table header descriptions
ID
chrm
start
end
strand
database_ID/chromosome_location
GB_LIST
genebank_accession_number
length
description
DATABASE
Subordinate gene
target_gene
transcript_id
public_transcript_id
gene_id
gene_symbol
description
mapLocation
GO_biological_process
GO_molecular_function
GO_cellular_component
unigene_id
SPOT_ID

Data table
ID chrm start end strand database_ID/chromosome_location GB_LIST genebank_accession_number length description DATABASE Subordinate gene target_gene transcript_id public_transcript_id gene_id gene_symbol description mapLocation GO_biological_process GO_molecular_function GO_cellular_component unigene_id SPOT_ID
TC0100001 chr1 1116 4272 + TR01010028 /// TR01010027 chr1.1.1 /// chr1.1.0 --- --- --- --- --- --- --- --- TC0100001
TC0100002 chr1 20405 20972 + TR01026467 chr1.3.554 --- --- --- --- --- --- --- --- TC0100002
TC0100003 chr1 42912 44799 + TR01003757 ENST00000359752 --- --- --- --- --- --- --- --- TC0100003
TC0100004 chr1 52878 53750 + TR01008353 ENST00000379479 --- Q5VT23_HUMAN Olfactory receptor, family 4, subfamily G, member 11 pseudogene. [Source:Uniprot/SPTREMBL;Acc:Q5VT23] --- GO:0007165 // signal transduction // IEA /// GO:0007186 // G-protein coupled receptor protein signaling pathway // IEA GO:0001584 // rhodopsin-like receptor activity // IEA /// GO:0004872 // receptor activity // IEA /// GO:0004984 // olfactory receptor activity // IEA GO:0016020 // membrane // IEA /// GO:0016021 // integral to membrane // IEA --- TC0100004
TC0100005 chr1 58954 59871 + TR01001831 NM_001005484 /// ENST00000326183 79501 OR4F5 olfactory receptor, family 4, subfamily F, member 5 1p36.33 GO:0007165 // signal transduction // IEA /// GO:0007186 // G-protein coupled receptor protein signaling pathway // IEA /// GO:0007608 // sensory perception of smell // IEA /// GO:0050896 // response to stimulus // IEA GO:0004872 // receptor activity // IEA /// GO:0004984 // olfactory receptor activity // IEA GO:0005886 // plasma membrane // IEA /// GO:0016021 // integral to membrane // IEA Hs.554500 TC0100005
TC0100006 chr1 310025 314825 + TR01024688 /// TR01024687 /// TR01024686 /// TR01024685 /// TR01024684 chr1.26.726 /// chr1.26.725 /// chr1.26.724 /// chr1.26.723 /// chr1.26.722 --- --- --- --- --- --- --- --- TC0100006
TC0100008 chr1 357522 358460 + TR01008487 /// TR01001865 NM_001005277 /// NM_001005224 /// NM_001005221 /// ENST00000327169 729759 OR4F29 olfactory receptor, family 4, subfamily F, member 29 1p36.33 /// 5q35.3 GO:0007165 // signal transduction // IEA /// GO:0007186 // G-protein coupled receptor protein signaling pathway // IEA /// GO:0007608 // sensory perception of smell // IEA /// GO:0050896 // response to stimulus // IEA GO:0004872 // receptor activity // IEA /// GO:0004984 // olfactory receptor activity // IEA GO:0005886 // plasma membrane // IEA /// GO:0016021 // integral to membrane // IEA Hs.712091 /// Hs.632360 /// Hs.712091 TC0100008
TC0100009 chr1 410855 411702 + TR01026780 chr1.31.728 --- --- --- --- --- --- --- --- TC0100009
TC0100010 chr1 554676 554744 + TR01002919 ENST00000349070 --- --- --- --- --- --- --- --- TC0100010
TC0100011 chr1 554815 554882 + TR01002964 ENST00000349504 --- --- --- --- --- --- --- --- TC0100011
TC0100012 chr1 555925 555992 + TR01002589 ENST00000345345 --- --- --- --- --- --- --- --- TC0100012
TC0100013 chr1 557932 557999 + TR01002671 ENST00000346390 --- --- --- --- --- --- --- --- TC0100013
TC0100014 chr1 558707 558776 + TR01002847 ENST00000348304 --- --- --- --- --- --- --- --- TC0100014
TC0100015 chr1 711269 711775 + TR01003656 ENST00000358533 --- --- --- --- --- --- --- --- TC0100015
TC0100016 chr1 742614 745077 + TR01001851 ENST00000326734 400728 FAM87B family with sequence similarity 87, member B --- --- --- GO:0016020 // membrane // IEA /// GO:0016021 // integral to membrane // IEA Hs.568078 /// Hs.690906 TC0100016
TC0100017 chr1 752910 779045 + TR01028654 /// TR01028653 /// TR01028652 /// TR01028651 /// TR01028650 /// TR01028649 /// TR01028648 /// TR01028647 /// TR01028646 /// TR01028645 /// TR01028644 /// TR01028643 /// TR01028642 /// TR01028641 /// TR01028640 chr1.43.743 /// chr1.43.742 /// chr1.43.741 /// chr1.43.740 /// chr1.43.739 /// chr1.43.738 /// chr1.43.737 /// chr1.43.736 /// chr1.43.735 /// chr1.43.734 /// chr1.43.733 /// chr1.43.732 /// chr1.43.731 /// chr1.43.730 /// chr1.43.729 --- --- --- --- --- --- --- --- TC0100017
TC0100018 chr1 781254 783614 + TR01001847 ENST00000326678 --- Q96BN7_HUMAN --- --- --- --- --- Hs.598729 TC0100018
TC0100019 chr1 850393 870375 + TR01028871 /// TR01028870 /// TR01028869 /// TR01009744 /// TR01002412 /// TR01002359 NM_152486 /// ENST00000342066 /// ENST00000341065 /// chr1.48.749 /// chr1.48.748 /// chr1.48.747 /// chr1.48.746 148398 SAMD11 sterile alpha motif domain containing 11 1p36.33 --- GO:0005488 // binding // IEA GO:0005634 // nucleus // IEA Hs.335293 TC0100019
TC0100020 chr1 885830 890962 + TR01029203 /// TR01029202 /// TR01009941 /// TR01008349 /// TR01002240 NM_198317 /// ENST00000379420 /// ENST00000338591 /// chr1.50.767 /// chr1.50.766 /// chr1.50.765 339451 KLHL17 kelch-like 17 (Drosophila) 1p36.33 --- GO:0003779 // actin binding // IEA /// GO:0005515 // protein binding // IEA GO:0030054 // cell junction // IEA /// GO:0045202 // synapse // IEA /// GO:0045211 // postsynaptic membrane // IEA Hs.109212 TC0100020
TC0100021 chr1 891740 900351 + TR01029228 /// TR01009548 /// TR01008348 /// TR01008347 /// TR01008346 /// TR01002261 NM_032129 /// ENST00000379410 /// ENST00000379409 /// ENST00000379407 /// ENST00000338967 /// chr1.51.769 /// chr1.51.768 84069 PLEKHN1 pleckstrin homology domain containing, family N member 1 1p36.33 --- --- --- Hs.528691 TC0100021

Total number of rows: 74057

Table truncated, full table size 27650 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL17976_Gene-level_probe_set_annotations.txt.gz 4.3 Mb (ftp)(http) TXT
GPL17976_hGlue_3_0_v1.clf.gz 31.7 Mb (ftp)(http) CLF
GPL17976_hGlue_3_0_v1.pgf.gz 120.5 Mb (ftp)(http) PGF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap