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Platform GPL17482 Query DataSets for GPL17482
Status Public on Jul 24, 2013
Title Agilent-024722 Bovine miRNA Microarray Rel.13.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bos taurus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16024722 or 2524722.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 23, 2013
Last update date Jul 24, 2013
Contact name Wataru Kurihara
E-mail(s) bioinfo@biomatrix.co.jp
Organization name Biomatrix Research Inc.
Street address Higashifukai 105
City Nagareyama
State/province Chiba
ZIP/Postal code 270-0101
Country Japan
 

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
PROBE_NAME
CONTROL_TYPE Control type
SPOT_ID Spot identifier
miRNA_ID
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location

Data table
ID COL ROW PROBE_NAME CONTROL_TYPE SPOT_ID miRNA_ID GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION
1 96 164 miRNABrightCorner30 pos CONTROL
2 96 162 DarkCorner pos CONTROL
3 96 160 ignore BLANK
4 96 158 A_38_P00015396 FALSE bta-miR-340 bta-miR-340 mir|bta-miR-340|mir|MIMAT0009296 chr7:1147047-1147067
5 96 156 A_38_P00015203 FALSE bta-miR-299 bta-miR-299 mir|bta-miR-299|mir|MIMAT0009274 chr21:67563580-67563597
6 96 154 A_38_P00001587 FALSE bta-miR-205 bta-miR-205 mir|bta-miR-205|mir|MIMAT0003545 chr16:75799993-75799979
7 96 152 A_38_P00015280 FALSE bta-miR-491 bta-miR-491 mir|bta-miR-491|mir|MIMAT0009332 chr8:23661722-23661710
8 96 150 A_38_P00015324 FALSE bta-miR-486 bta-miR-486 mir|bta-miR-486|mir|MIMAT0009329 chr27:36261870-36261859
9 96 148 ignore BLANK
10 96 146 A_38_P00015264 FALSE bta-miR-152 bta-miR-152 mir|bta-miR-152|mir|MIMAT0009238 chr19:39081224-39081238
11 96 144 A_38_P00001576 FALSE bta-miR-10a bta-miR-10a mir|bta-miR-10a|mir|MIMAT0003786 chr19:38549279-38549297
12 96 142 A_38_P00015025 FALSE bta-miR-451 bta-miR-451 mir|bta-miR-451|mir|MIMAT0009323 chr19:20796897-20796881
13 96 140 A_38_P00015478 FALSE bta-miR-33a bta-miR-33a mir|bta-miR-33a|mir|MIMAT0009294 chr5:113410757-113410775
14 96 138 ignore BLANK
15 96 136 A_38_P00015344 FALSE bta-miR-504 bta-miR-504 mir|bta-miR-504|mir|MIMAT0009340 chrX:22083722-22083710
16 96 134 ignore BLANK
17 96 132 A_38_P00001527 FALSE bta-miR-21-3p bta-miR-21-3p mir|bta-miR-21-3p|mir|MIMAT0003745|mir|bta-miR-21*_v18.0|mir|MIMAT0003745 "chr19:010049187-010049200,chr19:011033126-011033139"
18 96 130 ignore BLANK
19 96 128 ignore BLANK
20 96 126 ignore BLANK

Total number of rows: 15744

Table truncated, full table size 1105 Kbytes.




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