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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 09, 2004 |
| Title |
DEL-MAR 14K Integrated Systems |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Gallus gallus |
| |
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| Description |
Spotted amplified cDNA array on glass. 19200 spot corresponding to 14053 different genes.
liver / fat / muscle / pituitary / hypothalamus / pineal / testis / ovary / oviduct / Oligo
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| Web link |
http://www.ansc.umd.edu/faculty/tpresearch.htm
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| Contributor(s) |
Cogburn LA, Porter TE, Ellestad L, Wang X, Carré W |
| Citation(s) |
16554550 |
| Submission date |
Dec 06, 2004 |
| Last update date |
Mar 24, 2006 |
| Contact name |
Larry Albert Cogburn |
| E-mail(s) |
cogburn@udel.edu
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| Phone |
302-831-1335
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| Organization name |
University of Delaware
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| Department |
Animal and Food Sciences
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| Lab |
Avian Functional Genomics
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| Street address |
531 South College Ave.
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| City |
Newark |
| State/province |
DE |
| ZIP/Postal code |
19717 |
| Country |
USA |
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| Samples (321)
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GSM113981, GSM113982, GSM113983, GSM113984, GSM113985, GSM113986
GSM113987, GSM113988, GSM113989, GSM113990, GSM113991, GSM113992, GSM113993, GSM113994, GSM113995, GSM113996, GSM113997, GSM113998, GSM113999, GSM114000, GSM114001, GSM114002, GSM114003, GSM114004, GSM114005, GSM114006, GSM114007, GSM114008, GSM114009, GSM114010, GSM114011, GSM114012, GSM114013, GSM114014, GSM114015, GSM114016, GSM114017, GSM114018, GSM114019, GSM114020, GSM114021, GSM114022, GSM114023, GSM114024, GSM114025, GSM114026, GSM114027, GSM114028, GSM117232, GSM117447, GSM117507, GSM117508, GSM117511, GSM117512, GSM117514, GSM117516, GSM117517, GSM117518, GSM117519, GSM117520, GSM117553, GSM117554, GSM117555, GSM117556, GSM117557, GSM117558, GSM117559, GSM117572, GSM117573, GSM117574, GSM117575, GSM173692, GSM173693, GSM173694, GSM173695, GSM173696, GSM173697, GSM173698, GSM173699, GSM173700, GSM173701, GSM173702, GSM173703, GSM173704, GSM173705, GSM173706, GSM173707, GSM173708, GSM173709, GSM173710, GSM173711, GSM173712, GSM173713, GSM173714, GSM173715, GSM173716, GSM173717, GSM173718, GSM173719, GSM173720, GSM173721, GSM173722, GSM173723, GSM173724, GSM173725, GSM173726, GSM173727, GSM173728, GSM173729, GSM173730, GSM173731, GSM218783, GSM218784, GSM218785, GSM218786, GSM218787, GSM218788, GSM218789, GSM218790, GSM218791, GSM218792, GSM218793, GSM218794, GSM218795, GSM218796, GSM218797, GSM218798, GSM218799, GSM218800, GSM218801, GSM218802, GSM218803, GSM218804, GSM218805, GSM218806, GSM239670, GSM239671, GSM239672, GSM239673, GSM239674, GSM239675, GSM239676, GSM239677, GSM239678, GSM239679, GSM239680, GSM239681, GSM239682, GSM239683, GSM239684, GSM239685, GSM239686, GSM239687, GSM239688, GSM239689, GSM239690, GSM239691, GSM239692, GSM239693, GSM239694, GSM239695, GSM239696, GSM239697, GSM239698, GSM239699, GSM239700, GSM239701, GSM239702, GSM239703, GSM239704, GSM239705, GSM239706, GSM239707, GSM239708, GSM239709, GSM239710, GSM239711, GSM239712, GSM254030, GSM254031, GSM254032, GSM254033, GSM254034, GSM254035, GSM254036, GSM254037, GSM432484, GSM432485, GSM432486, GSM432487, GSM432488, GSM432489, GSM432490, GSM432491, GSM432492, GSM432493, GSM432494, GSM432495, GSM432496, GSM432497, GSM432498, GSM432499, GSM654426, GSM654427, GSM654428, GSM654429, GSM654430, GSM654431, GSM654432, GSM654433, GSM654434, GSM654435, GSM654436, GSM654437, GSM654438, GSM654439, GSM654440, GSM654441, GSM654442, GSM654443, GSM654444, GSM654445, GSM654446, GSM654447, GSM654448, GSM654449, GSM654450, GSM654451, GSM654452, GSM654453, GSM654454, GSM654455, GSM654456, GSM654457, GSM922814, GSM922815, GSM922816, GSM922817, GSM922818, GSM922819, GSM922820, GSM922821, GSM922822, GSM922823, GSM922824, GSM922825, GSM922826, GSM922827, GSM922828, GSM922829, GSM922830, GSM922831, GSM922832, GSM922833, GSM922834, GSM922835, GSM922836, GSM922837, GSM1116050, GSM1116051, GSM1116052, GSM1116053, GSM1116054, GSM1116055, GSM1116056, GSM1116057, GSM1116058, GSM1116059, GSM1116060, GSM1116061, GSM1116062, GSM1116063, GSM1116064, GSM1116065, GSM1116066, GSM1116067, GSM1116068, GSM1116069, GSM1116070, GSM1116071, GSM1116072, GSM1116073, GSM1267827, GSM1267828, GSM1267829, GSM1267830, GSM1267831, GSM1267832, GSM1267833, GSM1267834, GSM3473153, GSM3473154, GSM3473155, GSM3473156, GSM3473157, GSM3473158, GSM3473159, GSM3473160, GSM3473161, GSM3473162, GSM3473163, GSM3473164, GSM3473165, GSM3473166, GSM3473167, GSM3473168, GSM3473169, GSM3473170, GSM3473171, GSM3473172, GSM3473173, GSM3473174, GSM3473175, GSM3473176, GSM3473177, GSM3473178, GSM3473179, GSM3473180, GSM3473181, GSM3473182, GSM3473183
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| Series (12)
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| GSE5067 |
Characterization of Glucocorticoid-Induced Changes in Gene Expression in the Embryonic Pituitary Gland. |
| GSE5205 |
Analysis of Hepatic Gene Expression in Chickens with Hormonally-Induced Lean and Fat Phenotypes |
| GSE7254 |
Hepatic transcriptional profiling of juvenile broiler chickens divergently selected for high or low body weight |
| GSE8812 |
Hepatic transcriptional profiling of juvenile broiler chickens divergently selected for abdominal fatness or leanness |
| GSE9500 |
Utility of the Del-Mar 14K Chicken Microarray for Transcriptional Profiling in Different Orders of the Class Aves |
| GSE10052 |
Hypothalamic transcriptional profiling during the development of adiposity |
| GSE17267 |
Transcriptome uterus |
| GSE26584 |
Transcriptional Profiling of the Anterior Pituitary Gland of Genetically Selected Fat and Lean Chickens |
| GSE37585 |
Transcriptional profiling of abdominal adipose tissue in juvenile broiler chickens divergently selected for abdominal fatness or leanness |
| GSE45825 |
Transcriptional profiling of abdominal adipose tissue in juvenile broiler chickens divergently selected for high or low body weight |
| GSE52491 |
Gallus gallus white isthmus transcriptome |
| GSE122519 |
Transcriptional profiling in the anterior pituitary gland of juvenile broiler chickens genetically selected for high or low body weight |
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| Data table header descriptions |
| ID |
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| CLONE_NAME |
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| GB_ACC |
GenBank accession number of sequence |
| BLAST_X |
First BlastX result |
| BLAST_N |
First BlastN result |
| CAP3_ASSEMBLY |
Result of CAP3 Assembly |
| CLONE_LINK |
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| LOCALISATION |
Localisation of the gene on Chicken Assembly |
| BLOCK |
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| ROW |
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| COLUMN |
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| SPOT_ID |
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| Data table |
| ID |
CLONE_NAME |
GB_ACC |
BLAST_X |
BLAST_N |
CAP3_ASSEMBLY |
CLONE_LINK |
LOCALISATION |
BLOCK |
ROW |
COLUMN |
SPOT_ID |
| 1.1.1 |
pgp1c.pk002.f23 |
BI389872 |
No Hits Found |
Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete sequence |
Contig_16671.1 |
pgp1c/pgp1c.pk002.f23 |
chr24:4336858-4341858 |
1 |
1 |
1 |
|
| 1.1.2 |
pgp1c.pk003.h18 |
BI390179 |
unnamed protein product [Mus musculus] |
No Hits Found |
Contig_581.1 |
pgp1c/pgp1c.pk003.h18 |
chr3:5840848-5845848 |
1 |
1 |
2 |
|
| 1.1.3 |
pgp1c.pk002.f3 |
BI389874 |
No Hits Found |
No Hits Found |
|
pgp1c/pgp1c.pk002.f3 |
|
1 |
1 |
3 |
|
| 1.1.4 |
pgp1c.pk003.h23 |
BI390185 |
S-adenosylhomocysteine hydrolase-like 1; S-adenosyl homocysteinehydrolase homolog [Homo sapiens] |
Homo sapiens S-adenosylhomocysteine hydrolase-like 1 (AHCYL1), mRNA |
Contig_11827.3 |
pgp1c/pgp1c.pk003.h23 |
chr26:4915-9915 |
1 |
1 |
4 |
|
| 1.1.5 |
pgp1c.pk002.f7 |
BI389876 |
No Hits Found |
Homo sapiens 3 BAC RP11-305O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence |
Contig_1352.2 |
pgp1c/pgp1c.pk002.f7 |
chr4:60295673-60300673 |
1 |
1 |
5 |
|
| 1.1.6 |
pgp1c.pk003.h5 |
BI390187 |
sulfotransferase family 4A, member 1; sulfortranferase family 4A,member 1; sulfotransferase-related protein [Homosapiens] |
Homo sapiens sulfotransferase family 4A, member 1 (SULT4A1), mRNA |
Contig_25960.1 |
pgp1c/pgp1c.pk003.h5 |
chr1:65614231-65619231 |
1 |
1 |
6 |
|
| 1.1.7 |
pgp1c.pk002.g15 |
BI389882 |
similar to 6-phosphogluconate dehydrogenase, decarboxylating [Homo sapiens] |
Homo sapiens phosphogluconate dehydrogenase (PGD), mRNA |
Contig_6036.1 |
pgp1c/pgp1c.pk002.g15 |
chr21:3572965-3577965 |
1 |
1 |
7 |
|
| 1.1.8 |
pgp1c.pk003.h7 |
BI390189 |
No Hits Found |
No Hits Found |
Contig_4962.4 |
pgp1c/pgp1c.pk003.h7 |
chr18:6408835-6413835 |
1 |
1 |
8 |
|
| 1.1.9 |
pgp1n.pk001.l7 |
BI390636 |
KIAA0573 protein [Homo sapiens] |
Homo sapiens thioredoxin domain containing 4 (endoplasmic reticulum) (TXNDC4), mRNA |
Contig_26536.1 |
pgp1n/pgp1n.pk001.l7 |
chr2:89176309-89181309 |
1 |
1 |
9 |
|
| 1.1.10 |
pgp1n.pk002.o19 |
BI390969 |
GLUTATHIONE S-TRANSFERASE (CLASS-ALPHA) |
Gallus gallus class-alpha glutathione S-transferase (GST) mRNA, complete cds |
Contig_13404.1 |
pgp1n/pgp1n.pk002.o19 |
chr3:86717596-86722596 |
1 |
1 |
10 |
|
| 1.1.11 |
pgp1n.pk001.m1 |
|
No Hits Found |
Mouse DNA sequence from clone RP23-413O19 on chromosome 11, complete sequence |
|
pgp1n/pgp1n.pk001.m1 |
chr2:1035843-1040843 |
1 |
1 |
11 |
pgp1n.pk001.m1 |
| 1.1.12 |
pgp1n.pk002.o21 |
BI390972 |
laminin alpha 4 [Mus musculus] |
Homo sapiens laminin, alpha 4 (LAMA4), mRNA |
|
pgp1n/pgp1n.pk002.o21 |
chr3:64188121-64193121 |
1 |
1 |
12 |
|
| 1.1.13 |
pgp1n.pk001.m17 |
BI390641 |
c-myc binding protein [Homo sapiens] |
Mus musculus, clone MGC:30379 IMAGE:3666296, mRNA, complete cds |
Contig_784.1 |
pgp1n/pgp1n.pk001.m17 |
chrUn:85235125-85240125 |
1 |
1 |
13 |
|
| 1.1.14 |
pgp1n.pk002.o6 |
BI395003 |
Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolarproton pump E subunit) (V-ATPase 31 kDa subunit) (P31) |
Homo sapiens ATPase, H+ transporting, lysosomal 31kDa, V1 subunit Eisoform 1 (ATP6V1E1), mRNA |
Contig_3886.1 |
pgp1n/pgp1n.pk002.o6 |
chr1:58448589-58453589 |
1 |
1 |
14 |
|
| 1.1.15 |
pgp1n.pk001.m7 |
BI390645 |
No Hits Found |
No Hits Found |
Contig_22630.1 |
pgp1n/pgp1n.pk001.m7 |
chr1:106193537-106198537 |
1 |
1 |
15 |
|
| 1.1.16 |
pgp1n.pk002.o9 |
BI390980 |
retinoblastoma-binding protein 1-related protein [Rattusnorvegicus] |
Homo sapiens RBP1-like protein (BCAA), transcript variant 2, mRNA |
Contig_6120.1 |
pgp1n/pgp1n.pk002.o9 |
chrUn:67051855-67056855 |
1 |
1 |
16 |
|
| 1.1.17 |
pgp1n.pk003.p9 |
BI391313 |
karyopherin alpha 2; RAG cohort 1; importin alpha 1 [Homo sapiens] |
Homo sapiens karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2), mRNA |
Contig_13027.1 |
pgp1n/pgp1n.pk003.p9 |
chr18:6782034-6787034 |
1 |
1 |
17 |
|
| 1.1.18 |
pgp1n.pk005.a5 |
BI391638 |
Chain B, Cytochrome Bc1 Complex From Bovine |
No Hits Found |
Contig_15706.3 |
pgp1n/pgp1n.pk005.a5 |
chrUn:39550900-39555900 |
1 |
1 |
18 |
|
| 1.1.19 |
pgp1n.pk004.a12 |
BI391315 |
collapsin response mediator protein 1; collapsin response mediator protein 1 (dihydropyrimidinase-like 1) [Homo sapiens] |
Homo sapiens collapsin response mediator protein 1 (CRMP1), mRNA |
Contig_25831.1 |
pgp1n/pgp1n.pk004.a12 |
chr4:79544863-79549863 |
1 |
1 |
19 |
|
| 1.1.20 |
pgp1n.pk005.b15 |
BI391647 |
WW domain-containing protein 1 [Mus musculus] |
Homo sapiens, WW domain-containing protein 1, clone MGC:33686 IMAGE:5296005, mRNA, complete cds |
Contig_2230.1 |
pgp1n/pgp1n.pk005.b15 |
chr2:122469176-122474176 |
1 |
1 |
20 |
|
Total number of rows: 19200
Table truncated, full table size 3513 Kbytes.
| Supplementary data files not provided |
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