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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 12, 2013 |
| Title |
Saccharomyces 20080514MD_PMC |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
| Manufacturer |
Lewis-Sigler Institute Microarray Facility |
| Manufacture protocol |
The following parameters were used to manufacture the printed array named "20080514MD_PMC"
Printer: Arrayer 250A
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 16
Spot Rows per Sector: 17
Column Spacing: 235
Row Spacing: 240
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 254
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100700 SBSC_SONIC_1 1
100516 HYBRIDSC_4 1
100527 HYBRIDSC_15 1
100517 HYBRIDSC_5 1
100510 HYBRIDSB_11 1
100524 HYBRIDSC_12 1
100509 HYBRIDSB_10 1
100528 HYBRIDSC_16 1
100512 HYBRIDSB_13 1
100525 HYBRIDSC_13 1
100506 HYBRIDSB_7 1
100529 HYBRIDSC_17 1
100520 HYBRIDSC_8 1
100518 HYBRIDSC_6 1
100704 SBSC_SUPP_1 1
100522 HYBRIDSC_10 1
100519 HYBRIDSC_7 1
100504 HYBRIDSB_5 1
100511 HYBRIDSB_12 1
100521 HYBRIDSC_9 1
100526 HYBRIDSC_14 1
100513 HYBRIDSC_1 1
100508 HYBRIDSB_9 1
100507 HYBRIDSB_8 1
100505 HYBRIDSB_6 1
100523 HYBRIDSC_11 1
100515 HYBRIDSC_3 1
100501 HYBRIDSB_2 1
100500 HYBRIDSB_1 1
100503 HYBRIDSB_4 1
100502 HYBRIDSB_3 1
100514 HYBRIDSC_2 1
100700 SBSC_SONIC_1 1
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| Description |
SBSC print, a multi-organism print.
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| Submission date |
Jun 03, 2013 |
| Last update date |
Jul 11, 2013 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
maitreya@uw.edu
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| Phone |
206-543-2338
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| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Dunham Lab
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| Street address |
Foege Building, S403B, Box 355065
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| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
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| Samples (16)
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GSM1153177, GSM1153178, GSM1153179, GSM1153180, GSM1153181, GSM1153182
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| Series (1) |
| GSE47613 |
A New System for Comparative Functional Genomics of Saccharomyces Yeasts |
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| Data table header descriptions |
| ID |
feature/spot number |
| SPOT_ID |
clone identifier or gene name |
| ORGANISM |
the organism of the spotted sequence |
| ORF |
locus tag |
| ORF_NAME |
related S. cerevisiae locus tag |
| GENE_NAME |
the published name or description of the gene product |
| SEQUENCE |
oligonucleotide sequence |
| Data table |
| ID |
SPOT_ID |
ORGANISM |
ORF |
ORF_NAME |
GENE_NAME |
SEQUENCE |
| 1 |
--SBSC_SONIC_GENOMIC |
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| 2 |
--SBSC_SONIC_GENOMIC |
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| 3 |
--SBSC_SONIC_GENOMIC |
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| 4 |
--SBSC_SONIC_GENOMIC |
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| 5 |
--SBSC_SONIC_GENOMIC |
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| 6 |
--SBSC_SONIC_GENOMIC |
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| 7 |
--SBSC_SONIC_GENOMIC |
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| 8 |
--SBSC_SONIC_GENOMIC |
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| 9 |
YDL009C |
Saccharomyces cerevisiae |
YDL009C |
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GTTTTATGTTTTCACAACCCTTTTAAGAGATGTCTTGGACAAAAAAGCTTCTTCGTTGGTGATAGCTTCT |
| 10 |
YKL086W |
Saccharomyces cerevisiae |
YKL086W |
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SRX1 |
AGAAATTCCTCTCTCAGAGATCAGACGCCCCCTAGCGCCTGTGTTGGATCCTCAAAAGATCGACGCAATG |
| 11 |
YOL152W |
Saccharomyces cerevisiae |
YOL152W |
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FRE7 |
GATTAGAGATGAAATGTGTACCCTCTCAAATAATTTGCGCCAGTTATTTTTAGATGGGAAAATTGTGGTT |
| 12 |
YGR127W |
Saccharomyces cerevisiae |
YGR127W |
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|
AAGATCCCGTGGTCTGTTACCATTTATATTTTTGTCGATCCATAAAGCAGATTTTGAAGATTGGGATAAT |
| 13 |
YNL269W |
Saccharomyces cerevisiae |
YNL269W |
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BSC4 |
ACTGTGCCGCACGGCAGTTTTTGGCGCTATGACACCCTTTTCCCCAAGAAAATCGCATATTAACAACAAA |
| 14 |
YPL126W |
Saccharomyces cerevisiae |
YPL126W |
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NAN1 |
GCCTGGTAAGTAACACCATCACAACTTCGGCATCCAATAGCGATATTTTTGCAGAACAATTGCATAAACT |
| 15 |
YER130C |
Saccharomyces cerevisiae |
YER130C |
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TGTCGACAATTGTGTAACTACAGCTACTTCATCAAATCAGTTGGAGAGAAGGCTTTCGATATCCGACTAT |
| 16 |
YDL112W |
Saccharomyces cerevisiae |
YDL112W |
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TRM3 |
CCCTTCTAGGATATACTTGTCCTACGGTATCTTAGTTTTCTTCCAGAATAACAAACAGAAAACAATCAAC |
| 17 |
YNL227C |
Saccharomyces cerevisiae |
YNL227C |
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JJJ1 |
AAAAGCACTCCGTCCTTGTCGACTCTACCGTCCTCTATGTCTCCAACCTCCGCGATCGAGGTGTGCACTA |
| 18 |
YER187W |
Saccharomyces cerevisiae |
YER187W |
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GCCCTATCGTTACAGAGACGCAGTCAAGAGTTCGCCACCTCATGGATATCAATGACATATAGTCAGAGTT |
| 19 |
YKL106C-A |
Saccharomyces cerevisiae |
YKL106C-A |
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GCCATTTCCGTCGATATTACATCTGACAATAGGAAGATATGCGAGCTATGACTCCAACAATCACATGAGA |
| 20 |
YGL200C |
Saccharomyces cerevisiae |
YGL200C |
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EMP24 |
AATACTGTTTCTTGAACGAGAACACCGGTATCGAGACAAAAGACGTGACTTTCAACATTCATGGGGTGGT |
Total number of rows: 12672
Table truncated, full table size 1363 Kbytes.
| Supplementary data files not provided |
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