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Platform GPL17109 Query DataSets for GPL17109
Status Public on Apr 29, 2014
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mouse430_2_custom]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Custom CDF is comprised of the same probesets as the original CDF (platform GPL1261), but some probes were removed from their probesets.
The custom CDF was developed from the original Affymetrix CDF by removing probes that do not align to intended targets or cross-hybridize with non-homologous transcripts were removed from the respective probesets. Custom annotation were compiled by aligning remaining probe sequences to RefSeq mRNA sequences (downloaded 7/01/2013) for genes in GRC38 genome assembly.
Annotations provided in "Gene Symbol" and "Gene Description" columns only where we have sufficient evidence of hybridization.
Probesets lacking "Gene Symbol" and "Gene Description" annotations may be updated in the near future as our custom annotation develops further.
We did not use annotation provided by Affymetrix at all, but we added Gene Symbol, Gene Title and Entrez Gene from Affymetrix annotation table (Release 32) pending custom-annotation of probesets in the near future.
 
Submission date May 01, 2013
Last update date Jun 19, 2014
Contact name Uros Midic
E-mail(s) uros@msu.edu
Organization name Michigan State University
Department Animal Sciences
Lab Latham lab
Street address 474 S. Shaw Lane
City East Lansing
State/province MI
ZIP/Postal code 48824-1225
Country USA
 
Samples (7) GSM1132529, GSM1132530, GSM1132531, GSM1132532, GSM1132533, GSM1132534 
Series (1)
GSE46565 Contribution of CBX4 to cumulus oophorus cell phenotype in mice, and attendant effects in cumulus cell cloned embryos

Data table header descriptions
ID
Gene Symbol custom annotation
Gene Description custom annotation
Gene Symbol (Affymetrix Release 32)
Gene Title (Affymetrix Release 32)
Entrez Gene (Affymetrix Release 32)
ORF Gene Symbol
SPOT_ID

Data table
ID Gene Symbol Gene Description Gene Symbol (Affymetrix Release 32) Gene Title (Affymetrix Release 32) Entrez Gene (Affymetrix Release 32) ORF SPOT_ID
1415670_at Copg1 coatomer protein complex, subunit gamma 1 Copg coatomer protein complex, subunit gamma 54161 Copg1
1415671_at Atp6v0d1 ATPase, H+ transporting, lysosomal V0 subunit D1 Atp6v0d1 ATPase, H+ transporting, lysosomal V0 subunit D1 11972 Atp6v0d1
1415672_at Golga7 golgi autoantigen, golgin subfamily a, 7 Golga7 golgi autoantigen, golgin subfamily a, 7 57437 Golga7
1415673_at Psph phosphoserine phosphatase Psph phosphoserine phosphatase 100678 Psph
1415674_a_at Trappc4 trafficking protein particle complex 4 Trappc4 trafficking protein particle complex 4 60409 Trappc4
1415675_at Dpm2 dolichol-phosphate (beta-D) mannosyltransferase 2 Dpm2 dolichol-phosphate (beta-D) mannosyltransferase 2 13481 Dpm2
1415676_a_at Psmb5 proteasome (prosome, macropain) subunit, beta type 5 Psmb5 proteasome (prosome, macropain) subunit, beta type 5 19173 Psmb5
1415677_at Dhrs1 dehydrogenase/reductase (SDR family) member 1 Dhrs1 dehydrogenase/reductase (SDR family) member 1 52585 Dhrs1
1415678_at Ppm1a protein phosphatase 1A, magnesium dependent, alpha isoform Ppm1a protein phosphatase 1A, magnesium dependent, alpha isoform 19042 Ppm1a
1415679_at Psenen presenilin enhancer 2 homolog (C. elegans) Psenen presenilin enhancer 2 homolog (C. elegans) 66340 Psenen
1415680_at Anapc1 anaphase promoting complex subunit 1 Anapc1 anaphase promoting complex subunit 1 17222 Anapc1
1415681_at Mrpl43 mitochondrial ribosomal protein L43 Mrpl43 mitochondrial ribosomal protein L43 94067 Mrpl43
1415682_at Xpo7 exportin 7 Xpo7 exportin 7 65246 Xpo7
1415683_at Nmt1 N-myristoyltransferase 1 Nmt1 N-myristoyltransferase 1 18107 Nmt1
1415684_at Atg5 autophagy related 5 Atg5 autophagy-related 5 (yeast) 11793 Atg5
1415685_at Mtif2 mitochondrial translational initiation factor 2 Mtif2 mitochondrial translational initiation factor 2 76784 Mtif2
1415686_at Rab14 RAB14, member RAS oncogene family Rab14 RAB14, member RAS oncogene family 68365 Rab14
1415687_a_at Psap prosaposin Psap prosaposin 19156 Psap
1415688_at Ube2g1 ubiquitin-conjugating enzyme E2G 1 Ube2g1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) 67128 Ube2g1
1415689_s_at Zkscan3 zinc finger with KRAB and SCAN domains 3 Zkscan3 zinc finger with KRAB and SCAN domains 3 72739 Zkscan3

Total number of rows: 45101

Table truncated, full table size 4690 Kbytes.




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Supplementary file Size Download File type/resource
GPL17109_Mouse430_2_custom2.cdf.gz 13.5 Mb (ftp)(http) CDF

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