 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 10, 2013 |
| Title |
NimbleGen Rat CpG Island Plus RefSeq Promoter 720k array [100718_RN34_CpG_Refseq_Prom_MeDIP] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Rattus norvegicus |
| Manufacturer |
Nimblegen Systems Inc. |
| Manufacture protocol |
see NimbleGen website
|
| |
|
| Description |
DESIGN_NAME: 100718_RN34_CpG_Refseq_Prom_MeDIP
DESIGN_ID: 535623
SLIDE_LAYOUT_NAME: NimbleChip_HX3
|
| |
|
| Submission date |
Apr 10, 2013 |
| Last update date |
Apr 10, 2013 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
|
| Phone |
608-218-7600
|
| URL |
http://www.nimblegen.com/
|
| Street address |
504 S. Rosa Road
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
| |
|
| Samples (171)
|
GSM1119774, GSM1119775, GSM1119776, GSM1182868, GSM1182869, GSM1182870
GSM1182871, GSM1182872, GSM1182873, GSM1272699, GSM1272700, GSM1272701, GSM1272702, GSM1272703, GSM1272704, GSM1272705, GSM1272706, GSM1272707, GSM1272708, GSM1272709, GSM1272710, GSM1429994, GSM1429995, GSM1429996, GSM1429997, GSM1429998, GSM1429999, GSM1438556, GSM1438557, GSM1438558, GSM1438559, GSM1438560, GSM1438561, GSM1863006, GSM1863007, GSM1863008, GSM2835951, GSM2835952, GSM2835953, GSM2835954, GSM2835955, GSM2835956, GSM2835957, GSM2835958, GSM2835959, GSM2835960, GSM2835961, GSM2835962, GSM2835963, GSM2835964, GSM2835965, GSM2835966, GSM2835967, GSM2835968, GSM2835969, GSM2835970, GSM2835971, GSM2835972, GSM2835973, GSM2835974, GSM2835975, GSM2835976, GSM2835977, GSM2835978, GSM2835979, GSM2835980, GSM2835981, GSM2835982, GSM2835983, GSM2835984, GSM2835985, GSM2835986, GSM2835987, GSM2835988, GSM2835989, GSM2835990, GSM2835991, GSM2835992, GSM2835993, GSM2835994, GSM2835995, GSM2835996, GSM2835997, GSM2835998, GSM2835999, GSM2836000, GSM2836001, GSM2836002, GSM2836003, GSM2836004, GSM2836005, GSM2836006, GSM2836007, GSM2836008, GSM2836009, GSM2836010, GSM2836011, GSM2836012, GSM2836013, GSM2836014, GSM2836015, GSM2836016, GSM2836017, GSM2836018, GSM2836019, GSM2836020, GSM2836021, GSM2836022, GSM2836023, GSM2836024, GSM2836025, GSM2836026, GSM2836027, GSM2836028, GSM2836029, GSM2836030, GSM2836031, GSM2836032, GSM2836033, GSM2836034, GSM2836035, GSM2836036, GSM2836037, GSM2836038, GSM2836039, GSM2836040, GSM2836041, GSM2836042, GSM2836043, GSM2836044, GSM2836045, GSM2836046, GSM2836047, GSM2836048, GSM2836049, GSM2836050, GSM2836051, GSM2836052, GSM2836053, GSM2836054, GSM2836055, GSM2836056, GSM2836057, GSM2836058, GSM2836059, GSM2836060, GSM2836061, GSM2836062, GSM2836063, GSM2836064, GSM2836065, GSM2836066, GSM2836067, GSM2836068, GSM2836069, GSM2836070, GSM2836071, GSM2836072, GSM2836073, GSM2836074, GSM2836075, GSM2836076, GSM4083622, GSM4083623, GSM4083624, GSM4083625, GSM4083626, GSM4083627, GSM4083628, GSM4083629, GSM4083630
|
| Series (11)
|
| GSE45932 |
Rat MeDIP Array, naïve, epileptic, and adenosine treated |
| GSE48648 |
Extrauterine growth restriction on pulmonary vascular endothelial dysfunction in adult male rats: the role of epigenetic mechanisms |
| GSE52615 |
Effects of an antipsychotic (Olanzapine) involves alterations in gene specific DNA methylation |
| GSE59191 |
Epigenomics of rat born to dams fed a diet deficient in methyl group donors (MDD) |
| GSE59510 |
Environmentally Induced Transgenerational Epigenetic Reprogramming of Primordial Germ Cells and Subsequent Germline [NimbleGen] |
| GSE59511 |
Environmentally Induced Transgenerational Epigenetic Reprogramming of Primordial Germ Cells and Subsequent Germline |
| GSE60775 |
Transcriptomics and epigenomics of rat born to dams fed a diet deficient in methyl group donors |
| GSE72469 |
Environmentally Induced Epigenetic Transgenerational Inheritance of Altered SRY Genomic Binding During Gonadal Sex Determination |
| GSE106323 |
Hippocampal methylome of rats exposed to lead at different developmental stages |
| GSE137642 |
Ancestral Folate Promotes Neuronal Regeneration in Serial Generations of Progeny [MeDIP] |
| GSE137643 |
Ancestral folate promotes neuronal regeneration in serial generations of progeny |
|
| Data table header descriptions |
| ID |
PROBE_ID from .pos file |
| SEQ_ID |
|
| CHROMOSOME |
|
| RANGE_GB |
Chromosome ACCESSION.VERSION based on RGSC/Baylor version Rnor3.4 (rn4 assembly, Nov. 2004, version 3.4) |
| RANGE_START |
the start position of probe relative to CHROMOSOME |
| RANGE_END |
the end position of probe relative to CHROMOSOME |
| SPOT_ID |
|
| SEQUENCE |
probe sequence |
| Data table |
| ID |
SEQ_ID |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
SPOT_ID |
SEQUENCE |
| CHR01FS000266400 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
266400 |
266458 |
|
GATAACCATTTTATTGATGTCTTTAGATGCATGCTTATAAAGGAAAGGTTGGCAGAAAA |
| CHR01FS000266590 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
266590 |
266647 |
|
TCTTGTTTTCCAGCTTTGTGAACTAGAGTCAATGTACTAAAGCTAACGGAAACTGTGA |
| CHR01FS000266690 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
266690 |
266741 |
|
TATTCTGTGGTTCCTAAAGTTACAAGGGGAAAAACAGGACAGAATCTTAAAG |
| CHR01FS000266775 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
266775 |
266826 |
|
ATTGAAACAAGAAATTAAGTTAGTAACTTACCTAAAATTAATAATGTGATTA |
| CHR01FS000266885 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
266885 |
266941 |
|
GCAAATCTCCATCATAAACTTCGATCTTTTTTATCCTCCAAAAGCAATTGGGTTCAG |
| CHR01FS000267735 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
267735 |
267794 |
|
ATGACATTTGGTAAATATTTTTCTCTTTGATGTATGTTCATACCTCAATAAGATGGTTGA |
| CHR01FS000267915 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
267915 |
267981 |
|
TGAAATGGTATTGTCTTGGATTACATTGCAAGAAGACAGATGCATGTCTGATATGTAGGTTGATTTC |
| CHR01FS000268130 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
268130 |
268188 |
|
GATGTGGTGGATTTCTGTAATCAAATTTATATTTTCTGGGCAGGCAGGTTATATCCTTA |
| CHR01FS000268380 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
268380 |
268429 |
|
TGTTCCCCTCTCCATCAATACACCTTACCGTTTCTACCCCCCAAAATTCC |
| CHR01FS000268661 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
268661 |
268710 |
|
AGTTTGCTGGTAACATTCACCTCTGTACTTGACTTGTTCTGGCTGTGTCT |
| CHR01FS000268796 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
268796 |
268845 |
|
TGGGCCACATATGGGACAGGAGCTGAATGACTGTTCCTGCAGTCTGTGCT |
| CHR01FS000268891 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
268891 |
268949 |
|
ATTTGTAAGGAGTGAGACATCCCCATTTTGAGCATCTTTGTTCATGAGTTTCATGTGGT |
| CHR01FS000269221 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
269221 |
269274 |
|
GAACATAGTGGAGAATGTGGCTTTGTTCTAAGTTGGAGCGTCTTTTGGGTATAT |
| CHR01FS000269396 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
269396 |
269449 |
|
GTTCTTTCTCCATATCTTCACCAACATCTGCTGTCGACAGGTTATTGATCTTAG |
| CHR01FS000269501 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
269501 |
269560 |
|
CCCTGATGACTATGGATGTTGAACCATTCTTTATGTGCTTCTTAGCCATTAGATATTCCT |
| CHR01FS000270261 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
270261 |
270318 |
|
GAATTTCCAACTTGCTATTTTACATCTTTGAAGAATTGAATTTGAATATTTGTGAGGA |
| CHR01FS000270411 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
270411 |
270468 |
|
TCTGAGATCTTGTTTAATTTATTTCTATGAGACTTTAAGTTATTATCATACAAATCTT |
| CHR01FS000270603 |
chr1:266041-270891 |
chr1 |
NC_005100.2 |
270603 |
270656 |
|
ATTTTATACCCACCCACTTTGCTGTCGTTATGTATCAGGTTCAGTAGTTCTCTG |
| CHR01FS000756867 |
chr1:756777-761627 |
chr1 |
NC_005100.2 |
756867 |
756925 |
|
AAACACATAAAATTATTCTCAACCATCTTATTGAGGTATGAACATACATCAAAGAGAAA |
| CHR01FS000756997 |
chr1:756777-761627 |
chr1 |
NC_005100.2 |
756997 |
757061 |
|
ATGTCTGCATAGGAATTGATATTGTCAGGATGTACGTTGAATCTGTATGATTCCAGGAATTATTG |
Total number of rows: 713670
Table truncated, full table size 91425 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL16994_100718_RN34_CpG_Refseq_Prom_MeDIP.gff.gz |
2.1 Mb |
(ftp)(http) |
GFF |
| GPL16994_100718_RN34_CpG_Refseq_Prom_MeDIP.ndf.gz |
46.8 Mb |
(ftp)(http) |
NDF |
| GPL16994_100718_RN34_CpG_Refseq_Prom_MeDIP.pos.gz |
6.2 Mb |
(ftp)(http) |
POS |
| GPL16994_100718_RN34_CpG_Refseq_Prom_MeDIP_HX3.ncd.gz |
284 b |
(ftp)(http) |
NCD |
| GPL16994_100718_RN34_CpG_Refseq_Prom_MeDIP_probe_locations.gff.gz |
4.7 Mb |
(ftp)(http) |
GFF |
|
|
|
|
 |
Less...
More...