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Platform GPL16929 Query DataSets for GPL16929
Status Public on Aug 10, 2013
Title Agilent-035980 ponAbe2_HD_1M_3
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pongo pygmaeus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16035980 or 2535980.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113483
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 DarkCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 ponAbe2_chr4:87570204-87570260 FALSE chr4:87570204-87570260 chr4 NC_012595.1 87570204 87570260
5 534 1816 ponAbe2_chr4:60560107-60560163 FALSE chr4:60560107-60560163 chr4 NC_012595.1 60560107 60560163
6 534 1814 ponAbe2_chr5:12775360-12775413 FALSE chr5:12775360-12775413 chr5 NC_012596.1 12775360 12775413
7 534 1812 ponAbe2_chr5:25750661-25750716 FALSE chr5:25750661-25750716 chr5 NC_012596.1 25750661 25750716
8 534 1810 ponAbe2_chr4:20674022-20674076 FALSE chr4:20674022-20674076 chr4 NC_012595.1 20674022 20674076
9 534 1808 ponAbe2_chr3:165105299-165105349 FALSE chr3:165105299-165105349 chr3 NC_012594.1 165105299 165105349
10 534 1806 ponAbe2_chr4:3678875-3678930 FALSE chr4:3678875-3678930 chr4 NC_012595.1 3678875 3678930
11 534 1804 ponAbe2_chr4:14913109-14913168 FALSE chr4:14913109-14913168 chr4 NC_012595.1 14913109 14913168
12 534 1802 ponAbe2_chr5:37958986-37959040 FALSE chr5:37958986-37959040 chr5 NC_012596.1 37958986 37959040
13 534 1800 ponAbe2_chr4:106093987-106094040 FALSE chr4:106093987-106094040 chr4 NC_012595.1 106093987 106094040
14 534 1798 ponAbe2_chr5:16664240-16664299 FALSE chr5:16664240-16664299 chr5 NC_012596.1 16664240 16664299
15 534 1796 ponAbe2_chr4:94289596-94289654 FALSE chr4:94289596-94289654 chr4 NC_012595.1 94289596 94289654
16 534 1794 ponAbe2_chr4:192503604-192503655 FALSE chr4:192503604-192503655 chr4 NC_012595.1 192503604 192503655
17 534 1792 ponAbe2_chr4:46683940-46683991 FALSE chr4:46683940-46683991 chr4 NC_012595.1 46683940 46683991
18 534 1790 ponAbe2_chr4:77198465-77198518 FALSE chr4:77198465-77198518 chr4 NC_012595.1 77198465 77198518
19 534 1788 ponAbe2_chr5:29155949-29156001 FALSE chr5:29155949-29156001 chr5 NC_012596.1 29155949 29156001
20 534 1786 ponAbe2_chr3:164563389-164563446 FALSE chr3:164563389-164563446 chr3 NC_012594.1 164563389 164563446

Total number of rows: 974016

Table truncated, full table size 106599 Kbytes.




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