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Platform GPL16927 Query DataSets for GPL16927
Status Public on Aug 10, 2013
Title Agilent-035978 ponAbe2_HD_1M_1
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pongo pygmaeus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16035978 or 2535978.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113481
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 DarkCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 ponAbe2_chr1:6958409-6958467 FALSE chr1:6958409-6958467 chr1 NC_012591.1 6958409 6958467
5 534 1816 ponAbe2_chr2a:31785074-31785128 FALSE chr2a:31785074-31785128 chr2a NC_012592.1 31785074 31785128
6 534 1814 ponAbe2_chr1:106346724-106346780 FALSE chr1:106346724-106346780 chr1 NC_012591.1 106346724 106346780
7 534 1812 ponAbe2_chr1:102613952-102614009 FALSE chr1:102613952-102614009 chr1 NC_012591.1 102613952 102614009
8 534 1810 ponAbe2_chr1:68121695-68121751 FALSE chr1:68121695-68121751 chr1 NC_012591.1 68121695 68121751
9 534 1808 ponAbe2_chr2a:34229372-34229428 FALSE chr2a:34229372-34229428 chr2a NC_012592.1 34229372 34229428
10 534 1806 ponAbe2_chr1:181112677-181112734 FALSE chr1:181112677-181112734 chr1 NC_012591.1 181112677 181112734
11 534 1804 ponAbe2_chr2a:59101074-59101126 FALSE chr2a:59101074-59101126 chr2a NC_012592.1 59101074 59101126
12 534 1802 ponAbe2_chr1:130824437-130824496 FALSE chr1:130824437-130824496 chr1 NC_012591.1 130824437 130824496
13 534 1800 ponAbe2_chr1:73571208-73571265 FALSE chr1:73571208-73571265 chr1 NC_012591.1 73571208 73571265
14 534 1798 ponAbe2_chr1:168219726-168219783 FALSE chr1:168219726-168219783 chr1 NC_012591.1 168219726 168219783
15 534 1796 ponAbe2_chr1:189863950-189864005 FALSE chr1:189863950-189864005 chr1 NC_012591.1 189863950 189864005
16 534 1794 ponAbe2_chr1:72136448-72136500 FALSE chr1:72136448-72136500 chr1 NC_012591.1 72136448 72136500
17 534 1792 ponAbe2_chr1:33959440-33959497 FALSE chr1:33959440-33959497 chr1 NC_012591.1 33959440 33959497
18 534 1790 ponAbe2_chr1:50642250-50642303 FALSE chr1:50642250-50642303 chr1 NC_012591.1 50642250 50642303
19 534 1788 ponAbe2_chr1:189337248-189337304 FALSE chr1:189337248-189337304 chr1 NC_012591.1 189337248 189337304
20 534 1786 ponAbe2_chr2a:66556795-66556845 FALSE chr2a:66556795-66556845 chr2a NC_012592.1 66556795 66556845

Total number of rows: 974016

Table truncated, full table size 106874 Kbytes.




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