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Platform GPL16922 Query DataSets for GPL16922
Status Public on Aug 10, 2013
Title Agilent-035952 ponAbe2_HD_1M_4
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pongo pygmaeus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16035952 or 2535952.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113484
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 HsCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 ponAbe2_chr5:177318362-177318421 FALSE chr5:177318362-177318421 chr5 NC_012596.1 177318362 177318421
5 534 1816 ponAbe2_chr5:170466258-170466312 FALSE chr5:170466258-170466312 chr5 NC_012596.1 170466258 170466312
6 534 1814 ponAbe2_chr6:27038611-27038668 FALSE chr6:27038611-27038668 chr6 NC_012597.1 27038611 27038668
7 534 1812 ponAbe2_chr6:171950218-171950277 FALSE chr6:171950218-171950277 chr6 NC_012597.1 171950218 171950277
8 534 1810 ponAbe2_chr5:152621544-152621598 FALSE chr5:152621544-152621598 chr5 NC_012596.1 152621544 152621598
9 534 1808 ponAbe2_chr6:119704026-119704078 FALSE chr6:119704026-119704078 chr6 NC_012597.1 119704026 119704078
10 534 1806 ponAbe2_chr6:158977721-158977779 FALSE chr6:158977721-158977779 chr6 NC_012597.1 158977721 158977779
11 534 1804 ponAbe2_chr5:125159027-125159086 FALSE chr5:125159027-125159086 chr5 NC_012596.1 125159027 125159086
12 534 1802 ponAbe2_chr6:31171807-31171866 FALSE chr6:31171807-31171866 chr6 NC_012597.1 31171807 31171866
13 534 1800 ponAbe2_chr6:70372157-70372214 FALSE chr6:70372157-70372214 chr6 NC_012597.1 70372157 70372214
14 534 1798 ponAbe2_chr5:103047760-103047814 FALSE chr5:103047760-103047814 chr5 NC_012596.1 103047760 103047814
15 534 1796 ponAbe2_chr6:124480904-124480954 FALSE chr6:124480904-124480954 chr6 NC_012597.1 124480904 124480954
16 534 1794 ponAbe2_chr6:93455468-93455523 FALSE chr6:93455468-93455523 chr6 NC_012597.1 93455468 93455523
17 534 1792 ponAbe2_chr5:109795751-109795801 FALSE chr5:109795751-109795801 chr5 NC_012596.1 109795751 109795801
18 534 1790 ponAbe2_chr5:155655128-155655186 FALSE chr5:155655128-155655186 chr5 NC_012596.1 155655128 155655186
19 534 1788 ponAbe2_chr6:55299809-55299861 FALSE chr6:55299809-55299861 chr6 NC_012597.1 55299809 55299861
20 534 1786 ponAbe2_chr6:50052379-50052430 FALSE chr6:50052379-50052430 chr6 NC_012597.1 50052379 50052430

Total number of rows: 974016

Table truncated, full table size 106797 Kbytes.




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