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Platform GPL16921 Query DataSets for GPL16921
Status Public on Aug 10, 2013
Title Agilent-035950 ponAbe2_HD_400K_10
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pongo pygmaeus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16035950 or 2535950.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113480
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 528 796 DarkCorner pos
2 528 794 DarkCorner pos
3 528 792 DarkCorner pos
4 528 790 ponAbe2_chrX:16652202-16652255 FALSE chrX:16652202-16652255 chrX NC_012614.1 16652202 16652255
5 528 788 ponAbe2_chrX:94240862-94240917 FALSE chrX:94240862-94240917 chrX NC_012614.1 94240862 94240917
6 528 786 NA ignore
7 528 784 ponAbe2_chrX:136624314-136624368 FALSE chrX:136624314-136624368 chrX NC_012614.1 136624314 136624368
8 528 782 ponAbe2_chrX:1111155-1111207 FALSE chrX:1111155-1111207 chrX NC_012614.1 1111155 1111207
9 528 780 ponAbe2_chrX:30131188-30131246 FALSE chrX:30131188-30131246 chrX NC_012614.1 30131188 30131246
10 528 778 ponAbe2_chrX:8097907-8097962 FALSE chrX:8097907-8097962 chrX NC_012614.1 8097907 8097962
11 528 776 ponAbe2_chrX:64091365-64091419 FALSE chrX:64091365-64091419 chrX NC_012614.1 64091365 64091419
12 528 774 ponAbe2_chrX:79874968-79875025 FALSE chrX:79874968-79875025 chrX NC_012614.1 79874968 79875025
13 528 772 ponAbe2_chrX:129069470-129069525 FALSE chrX:129069470-129069525 chrX NC_012614.1 129069470 129069525
14 528 770 ponAbe2_chrX:43971992-43972047 FALSE chrX:43971992-43972047 chrX NC_012614.1 43971992 43972047
15 528 768 ponAbe2_chrX:131258857-131258910 FALSE chrX:131258857-131258910 chrX NC_012614.1 131258857 131258910
16 528 766 ponAbe2_chrX:126038194-126038252 FALSE chrX:126038194-126038252 chrX NC_012614.1 126038194 126038252
17 528 764 ponAbe2_chrX:9672840-9672899 FALSE chrX:9672840-9672899 chrX NC_012614.1 9672840 9672899
18 528 762 ponAbe2_chrX:150605209-150605265 FALSE chrX:150605209-150605265 chrX NC_012614.1 150605209 150605265
19 528 760 ponAbe2_chrX:110316069-110316124 FALSE chrX:110316069-110316124 chrX NC_012614.1 110316069 110316124
20 528 758 ponAbe2_chrX:27651541-27651598 FALSE chrX:27651541-27651598 chrX NC_012614.1 27651541 27651598

Total number of rows: 420288

Table truncated, full table size 45222 Kbytes.




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