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Platform GPL16920 Query DataSets for GPL16920
Status Public on Aug 10, 2013
Title Agilent-035944 ponAbe2_HD_1M_5
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pongo pygmaeus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16035944 or 2535944.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113485
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 DarkCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 ponAbe2_chr7:154023053-154023105 FALSE chr7:154023053-154023105 chr7 NC_012598.1 154023053 154023105
5 534 1816 ponAbe2_chr8:130169056-130169111 FALSE chr8:130169056-130169111 chr8 NC_012599.1 130169056 130169111
6 534 1814 ponAbe2_chr8:82401736-82401795 FALSE chr8:82401736-82401795 chr8 NC_012599.1 82401736 82401795
7 534 1812 ponAbe2_chr7:154460851-154460910 FALSE chr7:154460851-154460910 chr7 NC_012598.1 154460851 154460910
8 534 1810 ponAbe2_chr7:116559916-116559971 FALSE chr7:116559916-116559971 chr7 NC_012598.1 116559916 116559971
9 534 1808 ponAbe2_chr8:74418435-74418485 FALSE chr8:74418435-74418485 chr8 NC_012599.1 74418435 74418485
10 534 1806 ponAbe2_chr8:97848945-97848996 FALSE chr8:97848945-97848996 chr8 NC_012599.1 97848945 97848996
11 534 1804 ponAbe2_chr8:37061750-37061806 FALSE chr8:37061750-37061806 chr8 NC_012599.1 37061750 37061806
12 534 1802 ponAbe2_chr8:36777488-36777546 FALSE chr8:36777488-36777546 chr8 NC_012599.1 36777488 36777546
13 534 1800 ponAbe2_chr7:60401327-60401382 FALSE chr7:60401327-60401382 chr7 NC_012598.1 60401327 60401382
14 534 1798 ponAbe2_chr8:75465406-75465457 FALSE chr8:75465406-75465457 chr8 NC_012599.1 75465406 75465457
15 534 1796 ponAbe2_chr7:107835547-107835606 FALSE chr7:107835547-107835606 chr7 NC_012598.1 107835547 107835606
16 534 1794 ponAbe2_chr8:31921356-31921408 FALSE chr8:31921356-31921408 chr8 NC_012599.1 31921356 31921408
17 534 1792 ponAbe2_chr7:50031635-50031690 FALSE chr7:50031635-50031690 chr7 NC_012598.1 50031635 50031690
18 534 1790 ponAbe2_chr7:104219403-104219455 FALSE chr7:104219403-104219455 chr7 NC_012598.1 104219403 104219455
19 534 1788 ponAbe2_chr7:117542255-117542309 FALSE chr7:117542255-117542309 chr7 NC_012598.1 117542255 117542309
20 534 1786 ponAbe2_chr7:41165136-41165195 FALSE chr7:41165136-41165195 chr7 NC_012598.1 41165136 41165195

Total number of rows: 974016

Table truncated, full table size 106073 Kbytes.




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