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Platform GPL16918 Query DataSets for GPL16918
Status Public on Aug 10, 2013
Title Agilent-034047 RheMac2_HD_400K_10
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034047 or 2534047.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113499
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 528 796 MmuCGHBrightCorner pos
2 528 794 DarkCorner pos
3 528 792 DarkCorner pos
4 528 790 RheMac2_chrX:136022107-136022159 FALSE chrX:136022107-136022159 chrX NC_007878.1 136022107 136022159
5 528 788 RheMac2_chrX:133939379-133939439 FALSE chrX:133939379-133939439 chrX NC_007878.1 133939379 133939439
6 528 786 RheMac2_chrX:65117078-65117124 FALSE chrX:65117078-65117124 chrX NC_007878.1 65117078 65117124
7 528 784 RheMac2_chrX:64024758-64024807 FALSE chrX:64024758-64024807 chrX NC_007878.1 64024758 64024807
8 528 782 RheMac2_chrX:146294424-146294484 FALSE chrX:146294424-146294484 chrX NC_007878.1 146294424 146294484
9 528 780 RheMac2_chrX:99498199-99498244 FALSE chrX:99498199-99498244 chrX NC_007878.1 99498199 99498244
10 528 778 RheMac2_chrX:110362949-110363003 FALSE chrX:110362949-110363003 chrX NC_007878.1 110362949 110363003
11 528 776 RheMac2_chrX:73065631-73065688 FALSE chrX:73065631-73065688 chrX NC_007878.1 73065631 73065688
12 528 774 A_02_P14083642 FALSE chr13:55320517-55320575 chr13 NC_007870.1 55320517 55320575
13 528 772 RheMac2_chrX:23516542-23516597 FALSE chrX:23516542-23516597 chrX NC_007878.1 23516542 23516597
14 528 770 RheMac2_chrX:97980181-97980241 FALSE chrX:97980181-97980241 chrX NC_007878.1 97980181 97980241
15 528 768 RheMac2_chrX:18203479-18203539 FALSE chrX:18203479-18203539 chrX NC_007878.1 18203479 18203539
16 528 766 RheMac2_chrX:32458491-32458539 FALSE chrX:32458491-32458539 chrX NC_007878.1 32458491 32458539
17 528 764 RheMac2_chrX:18557171-18557220 FALSE chrX:18557171-18557220 chrX NC_007878.1 18557171 18557220
18 528 762 RheMac2_chrX:114016990-114017050 FALSE chrX:114016990-114017050 chrX NC_007878.1 114016990 114017050
19 528 760 RheMac2_chrX:104415717-104415764 FALSE chrX:104415717-104415764 chrX NC_007878.1 104415717 104415764
20 528 758 RheMac2_chrX:4157930-4157990 FALSE chrX:4157930-4157990 chrX NC_007878.1 4157930 4157990

Total number of rows: 420288

Table truncated, full table size 47077 Kbytes.




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