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Platform GPL16917 Query DataSets for GPL16917
Status Public on Aug 10, 2013
Title Agilent-034046 RheMac2_HD_1M_9
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034046 or 2534046.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113498
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 MmuCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 RheMac2_chr20:61326148-61326200 FALSE chr20:61326148-61326200 chr20 NC_007877.1 61326148 61326200
5 534 1816 NA ignore
6 534 1814 RheMac2_chr20:6787126-6787186 FALSE chr20:6787126-6787186 chr20 NC_007877.1 6787126 6787186
7 534 1812 RheMac2_chr17:39934713-39934767 FALSE chr17:39934713-39934767 chr17 NC_007874.1 39934713 39934767
8 534 1810 RheMac2_chr19:52450249-52450306 FALSE chr19:52450249-52450306 chr19 NC_007876.1 52450249 52450306
9 534 1808 RheMac2_chr19:10205137-10205194 FALSE chr19:10205137-10205194 chr19 NC_007876.1 10205137 10205194
10 534 1806 RheMac2_chr17:53743338-53743397 FALSE chr17:53743338-53743397 chr17 NC_007874.1 53743338 53743397
11 534 1804 RheMac2_chr18:10783829-10783882 FALSE chr18:10783829-10783882 chr18 NC_007875.1 10783829 10783882
12 534 1802 RheMac2_chr17:72011884-72011944 FALSE chr17:72011884-72011944 chr17 NC_007874.1 72011884 72011944
13 534 1800 RheMac2_chr18:64972735-64972795 FALSE chr18:64972735-64972795 chr18 NC_007875.1 64972735 64972795
14 534 1798 RheMac2_chr20:1812316-1812361 FALSE chr20:1812316-1812361 chr20 NC_007877.1 1812316 1812361
15 534 1796 RheMac2_chr20:53493300-53493350 FALSE chr20:53493300-53493350 chr20 NC_007877.1 53493300 53493350
16 534 1794 RheMac2_chr17:36090974-36091034 FALSE chr17:36090974-36091034 chr17 NC_007874.1 36090974 36091034
17 534 1792 RheMac2_chr19:5018758-5018805 FALSE chr19:5018758-5018805 chr19 NC_007876.1 5018758 5018805
18 534 1790 RheMac2_chr18:12389969-12390029 FALSE chr18:12389969-12390029 chr18 NC_007875.1 12389969 12390029
19 534 1788 RheMac2_chr18:64312895-64312945 FALSE chr18:64312895-64312945 chr18 NC_007875.1 64312895 64312945
20 534 1786 RheMac2_chr17:20684116-20684176 FALSE chr17:20684116-20684176 chr17 NC_007874.1 20684116 20684176

Total number of rows: 974016

Table truncated, full table size 103918 Kbytes.




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