NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL16914 Query DataSets for GPL16914
Status Public on Aug 10, 2013
Title Agilent-034043 RheMac2_HD_1M_5
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034043 or 2534043.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113494
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 MmuCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 RheMac2_chr8:10044940-10044988 FALSE chr8:10044940-10044988 chr8 NC_007865.1 10044940 10044988
5 534 1816 RheMac2_chr9:23687135-23687180 FALSE chr9:23687135-23687180 chr9 NC_007866.1 23687135 23687180
6 534 1814 RheMac2_chr9:32756929-32756989 FALSE chr9:32756929-32756989 chr9 NC_007866.1 32756929 32756989
7 534 1812 RheMac2_chr7:112497513-112497573 FALSE chr7:112497513-112497573 chr7 NC_007864.1 112497513 112497573
8 534 1810 RheMac2_chr7:159589617-159589666 FALSE chr7:159589617-159589666 chr7 NC_007864.1 159589617 159589666
9 534 1808 RheMac2_chr9:32080557-32080617 FALSE chr9:32080557-32080617 chr9 NC_007866.1 32080557 32080617
10 534 1806 RheMac2_chr8:127739187-127739247 FALSE chr8:127739187-127739247 chr8 NC_007865.1 127739187 127739247
11 534 1804 RheMac2_chr8:19011061-19011109 FALSE chr8:19011061-19011109 chr8 NC_007865.1 19011061 19011109
12 534 1802 RheMac2_chr7:105794596-105794656 FALSE chr7:105794596-105794656 chr7 NC_007864.1 105794596 105794656
13 534 1800 RheMac2_chr7:99196677-99196737 FALSE chr7:99196677-99196737 chr7 NC_007864.1 99196677 99196737
14 534 1798 RheMac2_chr9:16921911-16921971 FALSE chr9:16921911-16921971 chr9 NC_007866.1 16921911 16921971
15 534 1796 RheMac2_chr8:73237253-73237313 FALSE chr8:73237253-73237313 chr8 NC_007865.1 73237253 73237313
16 534 1794 RheMac2_chr7:161467413-161467460 FALSE chr7:161467413-161467460 chr7 NC_007864.1 161467413 161467460
17 534 1792 RheMac2_chr7:150812219-150812271 FALSE chr7:150812219-150812271 chr7 NC_007864.1 150812219 150812271
18 534 1790 RheMac2_chr8:31750762-31750812 FALSE chr8:31750762-31750812 chr8 NC_007865.1 31750762 31750812
19 534 1788 RheMac2_chr8:101616385-101616431 FALSE chr8:101616385-101616431 chr8 NC_007865.1 101616385 101616431
20 534 1786 RheMac2_chr7:126680041-126680092 FALSE chr7:126680041-126680092 chr7 NC_007864.1 126680041 126680092

Total number of rows: 974016

Table truncated, full table size 110570 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap