NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL16912 Query DataSets for GPL16912
Status Public on Aug 10, 2013
Title Agilent-034041 RheMac2_HD_1M_3
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034041 or 2534041.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113492
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 MmuCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 RheMac2_chr5:61882190-61882236 FALSE chr5:61882190-61882236 chr5 NC_007862.1 61882190 61882236
5 534 1816 RheMac2_chr5:3879589-3879635 FALSE chr5:3879589-3879635 chr5 NC_007862.1 3879589 3879635
6 534 1814 RheMac2_chr5:61275546-61275606 FALSE chr5:61275546-61275606 chr5 NC_007862.1 61275546 61275606
7 534 1812 RheMac2_chr5:2712159-2712218 FALSE chr5:2712159-2712218 chr5 NC_007862.1 2712159 2712218
8 534 1810 RheMac2_chr5:18579699-18579759 FALSE chr5:18579699-18579759 chr5 NC_007862.1 18579699 18579759
9 534 1808 RheMac2_chr5:87403759-87403813 FALSE chr5:87403759-87403813 chr5 NC_007862.1 87403759 87403813
10 534 1806 RheMac2_chr4:56817854-56817914 FALSE chr4:56817854-56817914 chr4 NC_007861.1 56817854 56817914
11 534 1804 RheMac2_chr5:68494590-68494650 FALSE chr5:68494590-68494650 chr5 NC_007862.1 68494590 68494650
12 534 1802 RheMac2_chr5:56110250-56110305 FALSE chr5:56110250-56110305 chr5 NC_007862.1 56110250 56110305
13 534 1800 RheMac2_chr4:111871234-111871294 FALSE chr4:111871234-111871294 chr4 NC_007861.1 111871234 111871294
14 534 1798 RheMac2_chr4:853858-853910 FALSE chr4:853858-853910 chr4 NC_007861.1 853858 853910
15 534 1796 RheMac2_chr4:122762230-122762282 FALSE chr4:122762230-122762282 chr4 NC_007861.1 122762230 122762282
16 534 1794 RheMac2_chr5:30248703-30248749 FALSE chr5:30248703-30248749 chr5 NC_007862.1 30248703 30248749
17 534 1792 RheMac2_chr4:50206711-50206759 FALSE chr4:50206711-50206759 chr4 NC_007861.1 50206711 50206759
18 534 1790 RheMac2_chr4:54273884-54273944 FALSE chr4:54273884-54273944 chr4 NC_007861.1 54273884 54273944
19 534 1788 RheMac2_chr4:102659966-102660025 FALSE chr4:102659966-102660025 chr4 NC_007861.1 102659966 102660025
20 534 1786 RheMac2_chr4:155039876-155039936 FALSE chr4:155039876-155039936 chr4 NC_007861.1 155039876 155039936

Total number of rows: 974016

Table truncated, full table size 110082 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap