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Platform GPL16911 Query DataSets for GPL16911
Status Public on Aug 10, 2013
Title Agilent-034040 PanTro2_HD_1M_10
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pan troglodytes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034040 or 2534040.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113479
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 528 796 PtCGHBrightCorner pos
2 528 794 DarkCorner pos
3 528 792 DarkCorner pos
4 528 790 panTro2_chrX:116102697-116102757 FALSE chrX:116102697-116102757 chrX NC_006491.2 116102697 116102757
5 528 788 panTro2_chrX:119751801-119751861 FALSE chrX:119751801-119751861 chrX NC_006491.2 119751801 119751861
6 528 786 panTro2_chrX:44202487-44202547 FALSE chrX:44202487-44202547 chrX NC_006491.2 44202487 44202547
7 528 784 panTro2_chrY:2470530-2470575 FALSE chrY:2470530-2470575 chrY NC_006492.2 2470530 2470575
8 528 782 panTro2_chrX:121509144-121509204 FALSE chrX:121509144-121509204 chrX NC_006491.2 121509144 121509204
9 528 780 panTro2_chrY:8735533-8735593 FALSE chrY:8735533-8735593 chrY NC_006492.2 8735533 8735593
10 528 778 panTro2_chrX:94585149-94585209 FALSE chrX:94585149-94585209 chrX NC_006491.2 94585149 94585209
11 528 776 panTro2_chrX:2018880-2018928 FALSE chrX:2018880-2018928 chrX NC_006491.2 2018880 2018928
12 528 774 panTro2_chrX:138210102-138210162 FALSE chrX:138210102-138210162 chrX NC_006491.2 138210102 138210162
13 528 772 panTro2_chrX:40459146-40459195 FALSE chrX:40459146-40459195 chrX NC_006491.2 40459146 40459195
14 528 770 panTro2_chrX:145769782-145769837 FALSE chrX:145769782-145769837 chrX NC_006491.2 145769782 145769837
15 528 768 panTro2_chrX:47922429-47922476 FALSE chrX:47922429-47922476 chrX NC_006491.2 47922429 47922476
16 528 766 panTro2_chrX:118939668-118939717 FALSE chrX:118939668-118939717 chrX NC_006491.2 118939668 118939717
17 528 764 panTro2_chrX:8365059-8365119 FALSE chrX:8365059-8365119 chrX NC_006491.2 8365059 8365119
18 528 762 panTro2_chrX:105438126-105438186 FALSE chrX:105438126-105438186 chrX NC_006491.2 105438126 105438186
19 528 760 panTro2_chrX:106691063-106691115 FALSE chrX:106691063-106691115 chrX NC_006491.2 106691063 106691115
20 528 758 panTro2_chrX:151761194-151761248 FALSE chrX:151761194-151761248 chrX NC_006491.2 151761194 151761248

Total number of rows: 420288

Table truncated, full table size 47261 Kbytes.




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