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Platform GPL16909 Query DataSets for GPL16909
Status Public on Aug 10, 2013
Title Agilent-034038 RheMac2_HD_1M_1
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034038 or 2534038.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113490
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 MmuCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 RheMac2_chr1:70593535-70593588 FALSE chr1:70593535-70593588 chr1 NC_007858.1 70593535 70593588
5 534 1816 RheMac2_chr1:67496115-67496165 FALSE chr1:67496115-67496165 chr1 NC_007858.1 67496115 67496165
6 534 1814 RheMac2_chr1:136915169-136915229 FALSE chr1:136915169-136915229 chr1 NC_007858.1 136915169 136915229
7 534 1812 RheMac2_chr1:141058965-141059025 FALSE chr1:141058965-141059025 chr1 NC_007858.1 141058965 141059025
8 534 1810 RheMac2_chr1:59561418-59561474 FALSE chr1:59561418-59561474 chr1 NC_007858.1 59561418 59561474
9 534 1808 RheMac2_chr1:56354369-56354425 FALSE chr1:56354369-56354425 chr1 NC_007858.1 56354369 56354425
10 534 1806 RheMac2_chr2:4579246-4579306 FALSE chr2:4579246-4579306 chr2 NC_007859.1 4579246 4579306
11 534 1804 RheMac2_chr1:33594941-33594992 FALSE chr1:33594941-33594992 chr1 NC_007858.1 33594941 33594992
12 534 1802 RheMac2_chr1:72312057-72312117 FALSE chr1:72312057-72312117 chr1 NC_007858.1 72312057 72312117
13 534 1800 RheMac2_chr1:4792537-4792595 FALSE chr1:4792537-4792595 chr1 NC_007858.1 4792537 4792595
14 534 1798 RheMac2_chr1:135572448-135572508 FALSE chr1:135572448-135572508 chr1 NC_007858.1 135572448 135572508
15 534 1796 RheMac2_chr1:151249761-151249821 FALSE chr1:151249761-151249821 chr1 NC_007858.1 151249761 151249821
16 534 1794 RheMac2_chr1:72460427-72460487 FALSE chr1:72460427-72460487 chr1 NC_007858.1 72460427 72460487
17 534 1792 RheMac2_chr1:96385130-96385190 FALSE chr1:96385130-96385190 chr1 NC_007858.1 96385130 96385190
18 534 1790 RheMac2_chr1:31973657-31973711 FALSE chr1:31973657-31973711 chr1 NC_007858.1 31973657 31973711
19 534 1788 RheMac2_chr1:194964649-194964709 FALSE chr1:194964649-194964709 chr1 NC_007858.1 194964649 194964709
20 534 1786 RheMac2_chr2:30104681-30104741 FALSE chr2:30104681-30104741 chr2 NC_007859.1 30104681 30104741

Total number of rows: 974016

Table truncated, full table size 110692 Kbytes.




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