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Platform GPL16908 Query DataSets for GPL16908
Status Public on Aug 10, 2013
Title Agilent-034037 PanTro2_HD_1M_9
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pan troglodytes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034037 or 2534037.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113478
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 PtCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 NA ignore
5 534 1816 PanTro2_chr20:7041761-7041809 FALSE chr20:7041761-7041809 chr20 NC_006487.2 7041761 7041809
6 534 1814 PanTro2_chr18:8875313-8875367 FALSE chr18:8875313-8875367 chr18 NC_006485.2 8875313 8875367
7 534 1812 PanTro2_chr22:42837726-42837779 FALSE chr22:42837726-42837779 chr22 NC_006489.2 42837726 42837779
8 534 1810 PanTro2_chr20:9221277-9221328 FALSE chr20:9221277-9221328 chr20 NC_006487.2 9221277 9221328
9 534 1808 PanTro2_chr19:453045-453090 FALSE chr19:453045-453090 chr19 NC_006486.2 453045 453090
10 534 1806 PanTro2_chr22:24355864-24355924 FALSE chr22:24355864-24355924 chr22 NC_006489.2 24355864 24355924
11 534 1804 NA ignore
12 534 1802 NA ignore
13 534 1800 PanTro2_chr19:48113723-48113775 FALSE chr19:48113723-48113775 chr19 NC_006486.2 48113723 48113775
14 534 1798 PanTro2_chr20:17463550-17463609 FALSE chr20:17463550-17463609 chr20 NC_006487.2 17463550 17463609
15 534 1796 PanTro2_chr18:27802312-27802369 FALSE chr18:27802312-27802369 chr18 NC_006485.2 27802312 27802369
16 534 1794 PanTro2_chr19:11887922-11887978 FALSE chr19:11887922-11887978 chr19 NC_006486.2 11887922 11887978
17 534 1792 PanTro2_chr19:49784359-49784412 FALSE chr19:49784359-49784412 chr19 NC_006486.2 49784359 49784412
18 534 1790 PanTro2_chr20:60386293-60386348 FALSE chr20:60386293-60386348 chr20 NC_006487.2 60386293 60386348
19 534 1788 PanTro2_chr18:21969027-21969082 FALSE chr18:21969027-21969082 chr18 NC_006485.2 21969027 21969082
20 534 1786 PanTro2_chr17:76904944-76904991 FALSE chr17:76904944-76904991 chr17 NC_006484.2 76904944 76904991

Total number of rows: 974016

Table truncated, full table size 104733 Kbytes.




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